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    LINC01565 long intergenic non-protein coding RNA 1565 [ Homo sapiens (human) ]

    Gene ID: 23434, updated on 5-Mar-2024

    Summary

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    Official Symbol
    LINC01565provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1565provided by HGNC
    Primary source
    HGNC:HGNC:17099
    See related
    Ensembl:ENSG00000198685 MIM:618259; AllianceGenome:HGNC:17099
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GR6; C3orf27
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See LINC01565 in Genome Data Viewer
    Location:
    3q21.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (128572000..128576086, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (131313560..131317646, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (128290843..128294929, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC90246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128243441-128243940 Neighboring gene CRISPRi-FlowFISH-validated RPN1 regulatory element 3 Neighboring gene transmembrane p24 trafficking protein 10 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128266479-128266979 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128285743-128286421 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128287100-128287778 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128287779-128288455 Neighboring gene uncharacterized LOC124909430 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128309380-128309880 Neighboring gene Sharpr-MPRA regulatory region 3129 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128321651-128322150 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14708 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20484 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:128336746-128337257 Neighboring gene ribophorin I Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128363771-128364272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128364273-128364772 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20487 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14709 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20488

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. [Structural features of GR6 gene and its expression in colorectal neoplasm]. Lin J, et al. Zhejiang Da Xue Xue Bao Yi Xue Ban, 2004 Mar. PMID 15067727
    2. Activation of a novel gene in 3q21 and identification of intergenic fusion transcripts with ecotropic viral insertion site I in leukemia. Pekarsky Y, et al. Cancer Res, 1997 Sep 15. PMID 9307271
    3. Multiple loci are associated with white blood cell phenotypes. Nalls MA, et al. PLoS Genet, 2011 Jun. PMID 21738480, Free PMC Article
    4. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Other Names

    • putative GR6 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125802.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC080005, AF008192
      Related
      ENST00000356020.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      128572000..128576086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      131313560..131317646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_007354.2: Suppressed sequence

      Description
      NM_007354.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O15544.1 GenPept UniProtKB/Swiss-Prot:O15544

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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