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    LOC100507403 uncharacterized LOC100507403 [ Homo sapiens (human) ]

    Gene ID: 100507403, updated on 28-Oct-2023

    Summary

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    Gene symbol
    LOC100507403
    Gene description
    uncharacterized LOC100507403
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC100507403 in Genome Data Viewer
    Location:
    8p11.23
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (37327364..37331931, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (37602713..37607282, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379377 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:36956985-36957648 Neighboring gene VISTA enhancer hs631 Neighboring gene NANOG hESC enhancer GRCh37_chr8:36964300-36964801 Neighboring gene nontranscribed ENCODE-defined enhancer downstream of SMARCE1P4 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 4 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:37000266-37001465 Neighboring gene Sharpr-MPRA regulatory region 9155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27224 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19105 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:37136489-37137688 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:37188590-37189789 Neighboring gene uncharacterized LOC124901930 Neighboring gene VISTA enhancer hs302 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27225 Neighboring gene long intergenic non-protein coding RNA 1605 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37310647-37311224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37374880-37375400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37375401-37375919 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:37378682-37379881 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:37387319-37387531 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37400987-37401487 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37404685-37405219 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37405335-37405836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37405837-37406336 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37413320-37413920 Neighboring gene uncharacterized LOC105379379 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:37417549-37418050 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:37418051-37418550

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188014.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC091182

    2. NR_188015.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC091182

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      37327364..37331931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      37602713..37607282 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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