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    Cdr2l cerebellar degeneration-related protein 2-like [ Mus musculus (house mouse) ]

    Gene ID: 237988, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Cdr2lprovided by MGI
    Official Full Name
    cerebellar degeneration-related protein 2-likeprovided by MGI
    Primary source
    MGI:MGI:2684867
    See related
    Ensembl:ENSMUSG00000050910 AllianceGenome:MGI:2684867
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm21; D030068L24Rik
    Summary
    Predicted to enable identical protein binding activity. Orthologous to human CDR2L (cerebellar degeneration related protein 2 like). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in adrenal adult (RPKM 33.3), ovary adult (RPKM 16.7) and 24 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Cdr2l in Genome Data Viewer
    Location:
    11 E2; 11 80.84 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (115272700..115286961)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (115381871..115396135)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene HID1 domain containing Neighboring gene predicted gene, 53654 Neighboring gene predicted gene, 32013 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:115268427-115268649 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:115269568-115269824 Neighboring gene mitochondrial ribosomal protein L58 Neighboring gene STARR-seq mESC enhancer starr_31157 Neighboring gene nuclear encoded tRNA arginine 5 (anticodon CCT)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    cerebellar degeneration-related protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080929.1 → NP_001074398.1  cerebellar degeneration-related protein 2-like

      See identical proteins and their annotated locations for NP_001074398.1

      Status: VALIDATED

      Source sequence(s)
      AL603828
      Consensus CDS
      CCDS36371.1
      UniProtKB/Swiss-Prot
      A2A6T1
      UniProtKB/TrEMBL
      B2RWR4
      Related
      ENSMUSP00000052096.6, ENSMUST00000053288.6
      Conserved Domains (1) summary
      COG1196
      Location:2 → 238
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      115272700..115286961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011249000.3 → XP_011247302.1  cerebellar degeneration-related protein 2-like isoform X1

      UniProtKB/TrEMBL
      B2RWR4
      Conserved Domains (1) summary
      COG1196
      Location:1 → 187
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_030245980.2 → XP_030101840.1  cerebellar degeneration-related protein 2-like isoform X1

      UniProtKB/TrEMBL
      B2RWR4
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2A6T1.1 GenPept UniProtKB/Swiss-Prot:A2A6T1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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