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    tbrg4.L transforming growth factor beta regulator 4 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398879, updated on 11-Apr-2024

    Summary

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    Official Symbol
    tbrg4.L
    Official Full Name
    transforming growth factor beta regulator 4 L homeolog
    Primary source
    Xenbase:XB-GENE-969732
    Locus tag
    XELAEV_18030537mg
    See related
    EnsemblRapid:ENSXLAG00005036450
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    tbrg4
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    Genomic context

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    See tbrg4.L in Genome Data Viewer
    Location:
    chromosome: 6L
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (6131118..6145761)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (3718282..3733238)

    Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 12 L homeolog Neighboring gene cyclic nucleotide binding domain containing 2 L homeolog Neighboring gene uncharacterized LOC121394522 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene uncharacterized LOC108718680 Neighboring gene cerebral cavernous malformations 2 protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fast kinase domain-containing protein 3 is a mitochondrial protein essential for cellular respiration. Simarro M, et al. Biochem Biophys Res Commun, 2010 Oct 22. PMID 20869947, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA metabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within mitochondrial RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mitochondrial mRNA processing ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within regulation of mitochondrial mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of mitochondrial mRNA stability ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrial matrix ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in ribonucleoprotein granule IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    FAST kinase domain-containing protein 4
    Names
    protein TBRG4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001089881.1 → NP_001083350.1  FAST kinase domain-containing protein 4

      See identical proteins and their annotated locations for NP_001083350.1

      Status: PROVISIONAL

      Source sequence(s)
      BC060456
      UniProtKB/Swiss-Prot
      Q6PA48
      UniProtKB/TrEMBL
      A0A8J1KWV9, A0A974CLN9
      Related
      ENSXLAP00005109043.1, ENSXLAT00005111226.1
      Conserved Domains (3) summary
      smart00952
      Location:568 → 622
      RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
      pfam06743
      Location:371 → 439
      FAST_1; FAST kinase-like protein, subdomain 1
      pfam08368
      Location:453 → 537
      FAST_2; FAST kinase-like protein, subdomain 2

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      6131118..6145761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041565325.1 → XP_041421259.1  FAST kinase domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8J1KYB5, A0A974CLN9
      Related
      ENSXLAP00005109054.1, ENSXLAT00005111237.1
      Conserved Domains (1) summary
      smart00952
      Location:568 → 600
      RAP; This domain is found in various eukaryotic species, particularly in apicomplexans

    2. XM_041565324.1 → XP_041421258.1  FAST kinase domain-containing protein 4 isoform X1

      UniProtKB/Swiss-Prot
      Q6PA48
      UniProtKB/TrEMBL
      A0A8J1KWV9, A0A974CLN9
      Conserved Domains (3) summary
      smart00952
      Location:568 → 622
      RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
      pfam06743
      Location:371 → 439
      FAST_1; FAST kinase-like protein, subdomain 1
      pfam08368
      Location:453 → 537
      FAST_2; FAST kinase-like protein, subdomain 2
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6PA48.1 GenPept UniProtKB/Swiss-Prot:Q6PA48

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.