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    ddx49.S DEAD-box helicase 49 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 394406, updated on 11-Apr-2024

    Summary

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    Official Symbol
    ddx49.S
    Official Full Name
    DEAD-box helicase 49 S homeolog
    Primary source
    Xenbase:XB-GENE-974827
    Locus tag
    XELAEV_18001128mg
    See related
    EnsemblRapid:ENSXLAG00005030587
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    ddx49; ddx49-a
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    Genomic context

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    See ddx49.S in Genome Data Viewer
    Location:
    chromosome: 1S
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (104797504..104807853, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694812.1 (279643..290355)

    Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108703696 Neighboring gene homer scaffold protein 3 S homeolog Neighboring gene COPI coat complex subunit epsilon S homeolog Neighboring gene ceramide synthase 1 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    probable ATP-dependent RNA helicase DDX49
    Names
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 49

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      104797504..104807853 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018239865.2 → XP_018095354.1  probable ATP-dependent RNA helicase DDX49

      UniProtKB/TrEMBL
      A0A8J0U3K9, Q800A3
      Related
      ENSXLAP00005091550.1, ENSXLAT00005093230.1
    Nucleotide Protein Strain
    Heading Accession and Version

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