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    farsa.L phenylalanyl-tRNA synthetase subunit alpha L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 380545, updated on 11-Apr-2024

    Summary

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    Official Symbol
    farsa.L
    Official Full Name
    phenylalanyl-tRNA synthetase subunit alpha L homeolog
    Primary source
    Xenbase:XB-GENE-6253419
    Locus tag
    XELAEV_18019057mg
    See related
    EnsemblRapid:ENSXLAG00005002599
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    frsa; cml33; farsa; farsl; pheha; farsla; farsa-a; farsa-b; farsla-b
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    Genomic context

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    See farsa.L in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (149338691..149355744)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (132418176..132433010)

    Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 39A like L homeolog Neighboring gene calreticulin homeolog L Neighboring gene synaptonemal complex central element protein 2 L homeolog Neighboring gene glutaryl-CoA dehydrogenase L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nishiyama A, et al. Nat Commun, 2020 Mar 6. PMID 32144273, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC64470

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables aminoacyl-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables magnesium ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phenylalanine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phenylalanine-tRNA ligase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within phenylalanyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within phenylalanyl-tRNA aminoacylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within protein heterotetramerization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of phenylalanine-tRNA ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of phenylalanine-tRNA ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    phenylalanine--tRNA ligase alpha subunit B
    Names
    pheRS
    phenylalanine--tRNA ligase alpha chain B
    phenylalanyl-tRNA synthetase alpha chain B
    phenylalanyl-tRNA synthetase alpha subunit B
    phenylalanyl-tRNA synthetase alpha subunit L homeolog
    phenylalanyl-tRNA synthetase, alpha subunit
    NP_001080851.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001087382.2 → NP_001080851.1  phenylalanine--tRNA ligase alpha subunit B

      See identical proteins and their annotated locations for NP_001080851.1

      Status: PROVISIONAL

      Source sequence(s)
      BC054256
      UniProtKB/Swiss-Prot
      Q7SYV0
      UniProtKB/TrEMBL
      A0A974DE75
      Related
      ENSXLAP00005007723.1, ENSXLAT00005007846.1
      Conserved Domains (2) summary
      PTZ00326
      Location:1 → 485
      PTZ00326; phenylalanyl-tRNA synthetase alpha chain; Provisional
      pfam01409
      Location:211 → 483
      tRNA-synt_2d; tRNA synthetases class II core domain (F)

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      149338691..149355744
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7SYV0.1 GenPept UniProtKB/Swiss-Prot:Q7SYV0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.