gpd1c glycerol-3-phosphate dehydrogenase 1c [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: gpd1cprovided by ZNC
Official Full Name: glycerol-3-phosphate dehydrogenase 1cprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2576
See related: Ensembl:ENSDARG00000036942 AllianceGenome:ZFIN:ZDB-GENE-040426-2576
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: gpd1; fc30a07; zgc:63859; wu:fc30a07
Summary: Predicted to enable glycerol-3-phosphate dehydrogenase [NAD+] activity. Predicted to be involved in NADH oxidation and glycerol-3-phosphate metabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be part of glycerol-3-phosphate dehydrogenase complex. Predicted to be active in cytosol. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 19

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (317629..325595, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (317422..325388, complement)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables NAD binding	IEA Inferred from Electronic Annotation more info
enables oxidoreductase activity	IEA Inferred from Electronic Annotation more info
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEA Inferred from Electronic Annotation more info
enables protein homodimerization activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in NADH oxidation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within carbohydrate metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within glycerol-3-phosphate catabolic process	IEA Inferred from Electronic Annotation more info
involved_in glycerol-3-phosphate catabolic process	IEA Inferred from Electronic Annotation more info
involved_in glycerol-3-phosphate metabolic process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within glycerol-3-phosphate metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info
part_of glycerol-3-phosphate dehydrogenase (FAD) complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: glycerol-3-phosphate dehydrogenase 1c

Names: glycerol-3-phosphate dehydrogenase 1 (soluble)

NP_999918.1

EC 1.1.1.8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_214753.2 → NP_999918.1 glycerol-3-phosphate dehydrogenase 1c

See identical proteins and their annotated locations for NP_999918.1

Status: VALIDATED

Source sequence(s)

CR548627, DT076842

UniProtKB/TrEMBL

A0A8M1PHK3, Q7T3H5

Related

ENSDARP00000113739.1, ENSDART00000134266.2

Conserved Domains (3) summary

TIGR03376
Location:5 → 342

glycerol3P_DH; glycerol-3-phosphate dehydrogenase (NAD(+))

pfam01210
Location:5 → 172

NAD_Gly3P_dh_N; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus

pfam07479
Location:196 → 336

NAD_Gly3P_dh_C; NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus