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    Vmn1r228 vomeronasal 1 receptor 228 [ Mus musculus (house mouse) ]

    Gene ID: 171226, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Vmn1r228provided by MGI
    Official Full Name
    vomeronasal 1 receptor 228provided by MGI
    Primary source
    MGI:MGI:2159624
    See related
    Ensembl:ENSMUSG00000060245 AllianceGenome:MGI:2159624
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    V1re3; Vldr1
    Summary
    Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be integral component of plasma membrane. Orthologous to human VN1R2 (vomeronasal 1 receptor 2) and VN1R4 (vomeronasal 1 receptor 4). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See Vmn1r228 in Genome Data Viewer
    Location:
    17 A3.2; 17 11.4 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (20996321..20997763, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (20776059..20777501, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_41999 Neighboring gene vomeronasal 1 receptor 226 Neighboring gene STARR-seq mESC enhancer starr_42000 Neighboring gene vomeronasal 1 receptor 227 Neighboring gene STARR-seq mESC enhancer starr_42001 Neighboring gene vomeronasal 1 receptor 229 Neighboring gene vomeronasal 1 receptor 230

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, et al. Nat Neurosci, 2002 Feb. PMID 11802169
    2. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article
    3. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables pheromone binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables pheromone receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to pheromone ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vomeronasal 1 receptor 228
    Names
    vomernasal 1 receptor Vmn1r228
    vomeronasal 1 receptor, E3
    vomeronasal receptor 1 D1
    vomeronasal type 1 receptor E3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_134192.3 → NP_598953.1  vomeronasal 1 receptor 228

      See identical proteins and their annotated locations for NP_598953.1

      Status: VALIDATED

      Source sequence(s)
      AC107868
      Consensus CDS
      CCDS28427.1
      UniProtKB/TrEMBL
      F6MBD3, F6MBE7, F6MBF1, F6MBF6, Q8R2A7
      Related
      ENSMUSP00000072243.5, ENSMUST00000072410.5
      Conserved Domains (2) summary
      pfam03402
      Location:71 → 315
      V1R; Vomeronasal organ pheromone receptor family, V1R
      pfam00001
      Location:77 → 315
      7tm_1; 7 transmembrane receptor (rhodopsin family)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      20996321..20997763 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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