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    4921504E06Rik RIKEN cDNA 4921504E06 gene [ Mus musculus (house mouse) ]

    Gene ID: 70909, updated on 5-Mar-2024

    Summary

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    Official Symbol
    4921504E06Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4921504E06 geneprovided by MGI
    Primary source
    MGI:MGI:1918087
    See related
    Ensembl:ENSMUSG00000026734 AllianceGenome:MGI:1918087
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4921522E24Rik
    Summary
    Orthologous to human C10orf67 (chromosome 10 open reading frame 67). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 3.7) See more
    Orthologs
    human all
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    Genomic context

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    See 4921504E06Rik in Genome Data Viewer
    Location:
    2 A3; 2 13.4 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (19467648..19558721, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (19462837..19553910, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1810010K12 gene Neighboring gene pancreas specific transcription factor 1a, opposite strand Neighboring gene pancreas specific transcription factor, 1a Neighboring gene STARR-seq mESC enhancer starr_03826 Neighboring gene STARR-positive B cell enhancer mm9_chr2:19427465-19427766 Neighboring gene STARR-positive B cell enhancer mm9_chr2:19450447-19450747 Neighboring gene STARR-seq mESC enhancer starr_03827 Neighboring gene predicted gene, 39764 Neighboring gene STARR-seq mESC enhancer starr_03829 Neighboring gene STARR-seq mESC enhancer starr_03830 Neighboring gene STARR-positive B cell enhancer ABC_E5895 Neighboring gene STARR-positive B cell enhancer ABC_E5896 Neighboring gene predicted gene 13348

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Ptf1a, a bHLH transcriptional gene, defines GABAergic neuronal fates in cerebellum. Hoshino M, et al. Neuron, 2005 Jul 21. PMID 16039563
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C10orf67 homolog, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027600.4 → NP_081876.2  uncharacterized protein C10orf67 homolog, mitochondrial

      See identical proteins and their annotated locations for NP_081876.2

      Status: PROVISIONAL

      Source sequence(s)
      AL928806, AL928877, BX649213
      Consensus CDS
      CCDS15716.1
      UniProtKB/TrEMBL
      Q8CET2
      Related
      ENSMUSP00000058720.5, ENSMUST00000062060.5
      Conserved Domains (4) summary
      COG1196
      Location:116 → 311
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam15821
      Location:37 → 145
      DUF4709; Domain of unknown function (DUF4709)
      pfam15852
      Location:477 → 547
      DUF4724; Domain of unknown function (DUF4724)
      pfam17253
      Location:420 → 447
      DUF5320; Family of unknown function (DUF5320)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      19467648..19558721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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