ints9 integrator complex subunit 9 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ints9provided by ZNC
Official Full Name: integrator complex subunit 9provided by ZNC
Primary source: ZFIN:ZDB-GENE-061013-129
See related: Ensembl:ENSDARG00000067913 AllianceGenome:ZFIN:ZDB-GENE-061013-129
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:7144223; zgc:154012
Summary: Predicted to enable DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated and snRNA processing. Predicted to be part of integrator complex. Orthologous to human INTS9 (integrator complex subunit 9). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 20

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (49895220..49928452)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (50092006..50125238)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in snRNA 3'-end processing	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within snRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of integrator complex	IBA Inferred from Biological aspect of Ancestor more info
part_of integrator complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: integrator complex subunit 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001077270.1 → NP_001070738.1 integrator complex subunit 9

See identical proteins and their annotated locations for NP_001070738.1

Status: PROVISIONAL

Source sequence(s)

BC124793

UniProtKB/TrEMBL

A0A8M1NA48, Q08BB6

Related

ENSDARP00000088637.3, ENSDART00000097865.5

Conserved Domains (3) summary

cd01392
Location:532 → 573

HTH_LacI; Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators

smart01027
Location:307 → 425

Beta-Casp; Beta-Casp domain

cd16294
Location:1 → 265

Int9-like_MBL-fold; integrator subunit 9, and related proteins; MBL-fold metallo-hydrolase domain