zp3d.1 zona pellucida glycoprotein 3d tandem duplicate 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zp3d.1provided by ZNC
Official Full Name: zona pellucida glycoprotein 3d tandem duplicate 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-5827
See related: Ensembl:ENSDARG00000040081 AllianceGenome:ZFIN:ZDB-GENE-030131-5827
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fi20d05; zpc4a-1; zgc:66432; wu:fi20d05
Summary: Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be active in extracellular matrix. Orthologous to human ZP3 (zona pellucida glycoprotein 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 16

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (42057998..42066617, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (42107966..42116585, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables acrosin binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in binding of sperm to zona pellucida	IBA Inferred from Biological aspect of Ancestor more info
involved_in egg coat formation	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of acrosome reaction	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in extracellular matrix	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: zona pellucida glycoprotein 3d tandem duplicate 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199838.1 → NP_956132.1 zona pellucida glycoprotein 3d tandem duplicate 1 precursor

See identical proteins and their annotated locations for NP_956132.1

Status: PROVISIONAL

Source sequence(s)

BC055654

UniProtKB/TrEMBL

Q7SXD2

Related

ENSDARP00000058619.1, ENSDART00000058620.2

Conserved Domains (2) summary

smart00241
Location:127 → 357

ZP; Zona pellucida (ZP) domain

pfam00100
Location:262 → 369

Zona_pellucida; Zona pellucida-like domain