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    Chct1 CHD1 helical C-terminal domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 303395, updated on 9-May-2024

    Summary

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    Official Symbol
    Chct1provided by RGD
    Official Full Name
    CHD1 helical C-terminal domain containing 1provided by RGD
    Primary source
    RGD:1310166
    See related
    Ensembl:ENSRNOG00000003143 AllianceGenome:RGD:1310166
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310166; C10h17orf64
    Summary
    Orthologous to human C17orf64 (chromosome 17 open reading frame 64). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward (RPKM 149.3) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Chct1 in Genome Data Viewer
    Location:
    10q26
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (70537206..70548972)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (70039510..70051556)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (72486023..72497052)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L37A, pseudogene 3 Neighboring gene ubiquitin specific peptidase 32 Neighboring gene DAB adaptor protein 1, pseudogene 1 Neighboring gene tetra-peptide repeat homeobox-like protein Neighboring gene large ribosomal subunit protein eL21-like Neighboring gene amyloid beta precursor protein binding protein 2 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    CHD1 helical C-terminal domain containing 1; CHD1 helical C-terminal domain containing protein 1
    Names
    uncharacterized protein C17orf64 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001430193.1 → NP_001417122.1  CHD1 helical C-terminal domain containing 1 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010

    2. NM_001430194.1 → NP_001417123.1  CHD1 helical C-terminal domain containing 1 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010

    3. NM_001430195.1 → NP_001417124.1  CHD1 helical C-terminal domain containing 1 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010

    4. NM_001430196.1 → NP_001417125.1  CHD1 helical C-terminal domain containing 1 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010

    5. NM_001430197.1 → NP_001417126.1  CHD1 helical C-terminal domain containing 1 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      70537206..70548972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039087657.2 → XP_038943585.1  CHD1 helical C-terminal domain containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I6GCS6, A6HHN5
      Related
      ENSRNOP00000085275.1

    2. XM_039087655.2 → XP_038943583.1  CHD1 helical C-terminal domain containing protein 1 isoform X3

      Conserved Domains (1) summary
      pfam13907
      Location:51 → 132
      DUF4208; Domain of unknown function (DUF4208)

    3. XM_039087656.2 → XP_038943584.1  CHD1 helical C-terminal domain containing protein 1 isoform X3

      Conserved Domains (1) summary
      pfam13907
      Location:51 → 132
      DUF4208; Domain of unknown function (DUF4208)

    4. XM_220804.10 → XP_220804.5  CHD1 helical C-terminal domain containing protein 1 isoform X1

      UniProtKB/TrEMBL
      D4A8L7
      Related
      ENSRNOP00000004193.6
      Conserved Domains (1) summary
      pfam13907
      Location:50 → 132
      DUF4208; Domain of unknown function (DUF4208)

    5. XM_006247061.5 → XP_006247123.1  CHD1 helical C-terminal domain containing protein 1 isoform X2

      Conserved Domains (1) summary
      pfam13907
      Location:40 → 122
      DUF4208; Domain of unknown function (DUF4208)

    6. XM_039087658.2 → XP_038943586.1  CHD1 helical C-terminal domain containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I6GCS6, A6HHN5
    Nucleotide Protein Strain
    Heading Accession and Version

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