sst6 somatostatin 6 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sst6provided by ZNC
Official Full Name: somatostatin 6provided by ZNC
Primary source: ZFIN:ZDB-GENE-081022-199
See related: Ensembl:ENSDARG00000093804 AllianceGenome:ZFIN:ZDB-GENE-081022-199
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:195219; zgc:195243
Summary: Predicted to enable hormone activity. Predicted to be involved in regulation of cell migration. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; gill; pleuroperitoneal region; and tail bud. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 23

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (29375676..29377133, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (29449135..29450318, complement)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables G protein-coupled receptor binding	IBA Inferred from Biological aspect of Ancestor more info
enables hormone activity	IEA Inferred from Electronic Annotation more info
enables neuropeptide hormone activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of cell migration	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: somatostatin 6

Names: SS6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001128784.2 → NP_001122256.2 somatostatin 6

Status: VALIDATED

Source sequence(s)

BC163206, CR381616, EH440100

UniProtKB/TrEMBL

A0A2R8Q7L7, A0A8M1NIH8, B3DIP8, B3DIQ1, F1QY50

Related

ENSDARP00000117669.1, ENSDART00000146411.2

Conserved Domains (1) summary

pfam03002
Location:97 → 112

Somatostatin; Somatostatin/Cortistatin family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007134.7 Reference GRCz11 Primary Assembly

Range

29375676..29377133 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021469853.1 → XP_021325528.1 somatostatin 6 isoform X1

UniProtKB/TrEMBL

A0A2R8Q7L7, A0A8M9PF58, B3DIP8, B3DIQ1

Related

ENSDART00000134843.2

Conserved Domains (1) summary

pfam03002
Location:81 → 96

Somatostatin; Somatostatin/Cortistatin family