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    rab36 RAB36, member RAS oncogene family [ Danio rerio (zebrafish) ]

    Gene ID: 780839, updated on 27-Mar-2024

    Summary

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    Official Symbol
    rab36provided by ZNC
    Official Full Name
    RAB36, member RAS oncogene familyprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040910-5
    See related
    Ensembl:ENSDARG00000014058 AllianceGenome:ZFIN:ZDB-GENE-040910-5
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:158229
    Summary
    Predicted to enable GTP binding activity and GTPase activity. Orthologous to human RAB36 (RAB36, member RAS oncogene family). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See rab36 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (17223681..17232437, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (17265717..17274454, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide Neighboring gene DEP domain containing 5, GATOR1 subcomplex subunit Neighboring gene uncharacterized LOC110440068 Neighboring gene guanine nucleotide binding protein (G protein), alpha z polypeptide Neighboring gene signal peptide peptidase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. CiliaCarta: An integrated and validated compendium of ciliary genes. van Dam TJP, et al. PLoS One, 2019. PMID 31095607, Free PMC Article
    2. RNA-sequencing analysis of TCDD-induced responses in zebrafish liver reveals high relatedness to in vivo mammalian models and conserved biological pathways. Li ZH, et al. PLoS One, 2013. PMID 24204792, Free PMC Article
    3. Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools. Li Y, et al. Comp Funct Genomics, 2004. PMID 18629171, Free PMC Article
    4. A plasmid library of full-length zebrafish rab proteins for in vivo cell biology. Hall TE, et al. Cell Logist, 2017. PMID 28396820, Free PMC Article
    5. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ras-related protein Rab-36
    NP_001073128.1
    XP_009303483.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079660.1 → NP_001073128.1  ras-related protein Rab-36

      See identical proteins and their annotated locations for NP_001073128.1

      Status: PROVISIONAL

      Source sequence(s)
      BC127570
      UniProtKB/TrEMBL
      A0A8N7UYG4, A0PJQ5
      Related
      ENSDARP00000039309.6, ENSDART00000038577.9
      Conserved Domains (2) summary
      smart00175
      Location:57 → 216
      RAB; Rab subfamily of small GTPases
      cl21455
      Location:56 → 221
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      17223681..17232437 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009305208.2 → XP_009303483.1  ras-related protein Rab-36 isoform X1

      UniProtKB/TrEMBL
      A0A8M3BCW7
      Conserved Domains (2) summary
      smart00175
      Location:57 → 182
      RAB; Rab subfamily of small GTPases
      cl21455
      Location:56 → 187
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein Strain
    Heading Accession and Version

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