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    LOC105377143 uncharacterized LOC105377143 [ Homo sapiens (human) ]

    Gene ID: 105377143, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105377143
    Gene description
    uncharacterized LOC105377143
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105377143 in Genome Data Viewer
    Location:
    3p14.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (66730378..66738336, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (66775064..66783017, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (66780802..66788760, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein L21 pseudogene 41 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_70957 Neighboring gene uncharacterized LOC105377142 Neighboring gene uncharacterized LOC105377144 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:66848705-66849255 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:66893104-66893642 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:66893643-66894179 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:67038375-67039124 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:67039125-67039874 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:67039875-67040624 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20045 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14509 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20046 Neighboring gene kelch repeat and BTB domain containing 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135533.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC104440

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      66730378..66738336 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      66775064..66783017 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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