mrps-17 Small ribosomal subunit protein uS17m [Caenorhabditis elegans] - Gene

Summary

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Gene symbol: mrps-17
Gene description: Small ribosomal subunit protein uS17m
Locus tag: CELE_C05D11.10
See related: AllianceGenome:WB:WBGene00015487
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in anal depressor muscle; hypodermis; intestine; and pharynx. Orthologous to human MRPS17 (mitochondrial ribosomal protein S17). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See mrps-17 in Genome Data Viewer

Location:: chromosome: III

Exon count:: 3

Sequence:: Chromosome: III; NC_003281.10 (6431042..6431798, complement)

Chromosome III - NC_003281.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

C05D11.10 (e-PCR)
- UniSTS:315411

C05D11.3 (e-PCR)
- UniSTS:320453

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info
enables structural constituent of ribosome	ISS Inferred from Sequence or Structural Similarity more info	PubMed

Process	Evidence Code	Pubs
involved_in mitochondrial translation	ISS Inferred from Sequence or Structural Similarity more info	PubMed

Component	Evidence Code	Pubs
part_of mitochondrial small ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
part_of mitochondrial small ribosomal subunit	IEA Inferred from Electronic Annotation more info
part_of mitochondrial small ribosomal subunit	ISS Inferred from Sequence or Structural Similarity more info	PubMed
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Small ribosomal subunit protein uS17m

NP_498409.1

Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003281.10 Reference assembly

Range

6431042..6431798 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_066008.6 → NP_498409.1 Small ribosomal subunit protein uS17m [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_498409.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q11189

Conserved Domains (1) summary

pfam13325
Location:102 → 155

MCRS_N; N-terminal region of micro-spherule protein