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    zdhhc5b zinc finger DHHC-type palmitoyltransferase 5b [ Danio rerio (zebrafish) ]

    Gene ID: 792560, updated on 27-Mar-2024

    Summary

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    Official Symbol
    zdhhc5bprovided by ZNC
    Official Full Name
    zinc finger DHHC-type palmitoyltransferase 5bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-101117-1
    See related
    Ensembl:ENSDARG00000087417 AllianceGenome:ZFIN:ZDB-GENE-101117-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human ZDHHC5 (zinc finger DHHC-type palmitoyltransferase 5). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See zdhhc5b in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (48998678..49028967)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (50010076..50041217)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene macrophage migration inhibitory factor Neighboring gene cleavage factor polyribonucleotide kinase subunit 1 Neighboring gene septin 8b Neighboring gene sideroflexin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Protein palmitoylation activate zygotic gene expression during the maternal-to-zygotic transition. Du Z, et al. Biochem Biophys Res Commun, 2016 Jun 24. PMID 27235108
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-cysteine S-palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in intracellular organelle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    palmitoyltransferase ZDHHC5-like
    Names
    zinc finger DHHC-type containing 5b
    zmp:0000000909

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      48998678..49028967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009291297.3 → XP_009289572.1  palmitoyltransferase ZDHHC5-like isoform X2

      UniProtKB/TrEMBL
      A0A8M3AI50
      Conserved Domains (1) summary
      pfam01529
      Location:110 → 235
      zf-DHHC; DHHC palmitoyltransferase

    2. XM_009291295.3 → XP_009289570.1  palmitoyltransferase ZDHHC5-like isoform X1

      See identical proteins and their annotated locations for XP_009289570.1

      UniProtKB/Swiss-Prot
      E7FBS9
      Related
      ENSDARP00000104903.1, ENSDART00000128508.3
      Conserved Domains (1) summary
      pfam01529
      Location:110 → 235
      DHHC; DHHC palmitoyltransferase

    3. XM_009291298.3 → XP_009289573.1  palmitoyltransferase ZDHHC5-like isoform X3

      UniProtKB/TrEMBL
      A0A8M3ASA6
      Conserved Domains (1) summary
      pfam01529
      Location:110 → 235
      zf-DHHC; DHHC palmitoyltransferase

    4. XM_005169633.4 → XP_005169690.1  palmitoyltransferase ZDHHC5-like isoform X4

      UniProtKB/TrEMBL
      A0A8M2BH23
      Conserved Domains (1) summary
      pfam01529
      Location:110 → 235
      zf-DHHC; DHHC palmitoyltransferase
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E7FBS9.1 GenPept UniProtKB/Swiss-Prot:E7FBS9

    Gene LinkOut

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    Research Materials