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    rpap1 RNA polymerase II associated protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 570666, updated on 27-Mar-2024

    Summary

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    Official Symbol
    rpap1provided by ZNC
    Official Full Name
    RNA polymerase II associated protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090914-1
    See related
    Ensembl:ENSDARG00000075072 AllianceGenome:ZFIN:ZDB-GENE-090914-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be involved in transcription by RNA polymerase II. Orthologous to human RPAP1 (RNA polymerase II associated protein 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See rpap1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (31535808..31579706, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (31518845..31562743, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene inositol-trisphosphate 3-kinase A Neighboring gene leukocyte receptor tyrosine kinase Neighboring gene si:dkey-13p1.4 Neighboring gene HEAT repeat containing 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Revealing genes associated with vitellogenesis in the liver of the zebrafish (Danio rerio) by transcriptome profiling. Levi L, et al. BMC Genomics, 2009 Mar 31. PMID 19335895, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase II-associated protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      31535808..31579706 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003200358.4 → XP_003200406.2  RNA polymerase II-associated protein 1

      UniProtKB/TrEMBL
      A0A8M9PPB9, E7FGQ5
      Related
      ENSDARP00000100448.2, ENSDART00000110167.4
      Conserved Domains (2) summary
      pfam08620
      Location:376 → 442
      RPAP1_C; RPAP1-like, C-terminal
      pfam08621
      Location:233 → 276
      RPAP1_N; RPAP1-like, N-terminal

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394997.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      437720..481792 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473203.1 → XP_021328878.1  RNA polymerase II-associated protein 1

      UniProtKB/TrEMBL
      A0A8M9PPB9, E7FGQ5
      Conserved Domains (2) summary
      pfam08620
      Location:376 → 442
      RPAP1_C; RPAP1-like, C-terminal
      pfam08621
      Location:233 → 276
      RPAP1_N; RPAP1-like, N-terminal
    Nucleotide Protein Strain
    Heading Accession and Version

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