U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4345473 proton pump-interactor BIP131-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345473, updated on 6-Jun-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4345473
    Gene description
    proton pump-interactor BIP131-like
    Locus tag
    OSNPB_080390000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    bip131; OsJ_27178; P0671F11.9
    Expression
    Ubiquitous expression in roots after flowering (RPKM 55.7), leaves after flowering (RPKM 55.6) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4345473 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (18474159..18480761)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC107282059 Neighboring gene protein unc-13 homolog Neighboring gene DIBOA-glucoside dioxygenase BX6

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    proton pump-interactor BIP131
    Names
    BRI1-KD interacting protein 131
    BRI1-interacting protein 131
    LOC_Os08g30060
    Os08g0390000
    proton pump-interactor 1
    putative proton pump interactor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403571.1 → NP_001390500.1  proton pump-interactor BIP131

      Status: VALIDATED

      Source sequence(s)
      AB117988, CB670061, CI181490
      UniProtKB/Swiss-Prot
      Q6ZBF6
      UniProtKB/TrEMBL
      B8BAH2

    2. NM_001403572.1 → NP_001390501.1  proton pump-interactor BIP131

      Status: VALIDATED

      Source sequence(s)
      AB117988, AU077459, BT131217
      UniProtKB/Swiss-Prot
      Q6ZBF6
      UniProtKB/TrEMBL
      B8BAH2

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      18474159..18480761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794669.2 → XP_015650155.1  proton pump-interactor BIP131 isoform X2

      UniProtKB/Swiss-Prot
      Q6ZBF6
      Conserved Domains (1) summary
      cl25732
      Location:89 → 348
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_015794670.2 → XP_015650156.1  proton pump-interactor BIP131 isoform X2

      UniProtKB/Swiss-Prot
      Q6ZBF6
      Conserved Domains (1) summary
      cl25732
      Location:89 → 348
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_026027473.1 → XP_025883258.1  proton pump-interactor BIP131 isoform X1

      UniProtKB/TrEMBL
      B8BAH2
      Conserved Domains (1) summary
      cl25732
      Location:109 → 368
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ZBF6.1 GenPept UniProtKB/Swiss-Prot:Q6ZBF6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials