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    LOC4348157 putative disease resistance protein RGA1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348157, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4348157
    Gene description
    putative disease resistance protein RGA1
    Locus tag
    OSNPB_100161400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 1.6), roots before flowering (RPKM 1.6) and 6 other tissues See more
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    Genomic context

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    See LOC4348157 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (3908102..3912702, complement)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272652 Neighboring gene uncharacterized LOC4348156 Neighboring gene uncharacterized LOC107278976 Neighboring gene uncharacterized LOC9266771

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative disease resistance protein RGA1
    Names
    Os10g0161400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      3908102..3912702 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757567.2 → XP_015613053.1  putative disease resistance protein RGA1

      UniProtKB/TrEMBL
      A0A0U2S724, A0A5S6RA47, A2Z596, A3C2R9, Q7G752, Q8SAX2
      Conserved Domains (4) summary
      PLN03210
      Location:585 → 796
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:603 → 626
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:210 → 419
      NB-ARC; NB-ARC domain
      pfam18052
      Location:12 → 98
      Rx_N; Rx N-terminal domain

    2. XM_015757565.2 → XP_015613051.1  putative disease resistance protein RGA1

      UniProtKB/TrEMBL
      A0A0U2S724, A0A5S6RA47, A2Z596, A3C2R9, Q7G752, Q8SAX2
      Conserved Domains (4) summary
      PLN03210
      Location:585 → 796
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:603 → 626
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:210 → 419
      NB-ARC; NB-ARC domain
      pfam18052
      Location:12 → 98
      Rx_N; Rx N-terminal domain

    3. XM_015757566.2 → XP_015613052.1  putative disease resistance protein RGA1

      UniProtKB/TrEMBL
      A0A0U2S724, A0A5S6RA47, A2Z596, A3C2R9, Q7G752, Q8SAX2
      Conserved Domains (4) summary
      PLN03210
      Location:585 → 796
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:603 → 626
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:210 → 419
      NB-ARC; NB-ARC domain
      pfam18052
      Location:12 → 98
      Rx_N; Rx N-terminal domain

    4. XM_026021017.1 → XP_025876802.1  putative disease resistance protein RGA1

      UniProtKB/TrEMBL
      A0A0U2S724, A0A5S6RA47, A2Z596, A3C2R9, Q7G752, Q8SAX2
      Conserved Domains (4) summary
      PLN03210
      Location:585 → 796
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:603 → 626
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:210 → 419
      NB-ARC; NB-ARC domain
      pfam18052
      Location:12 → 98
      Rx_N; Rx N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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