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    LOC4332918 peptidyl-prolyl cis-trans isomerase PASTICCINO1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332918, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4332918
    Gene description
    peptidyl-prolyl cis-trans isomerase PASTICCINO1
    Locus tag
    OSNPB_030367000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 27.3), leaves after flowering (RPKM 27.1) and 6 other tissues See more
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    Genomic context

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    See LOC4332918 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (14359337..14370725)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936105 Neighboring gene CST complex subunit STN1 Neighboring gene flavonoid 3',5'-hydroxylase 1 Neighboring gene F-box protein At5g49610-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase PASTICCINO1
    Names
    Os03g0367000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      14359337..14370725
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776154.2 → XP_015631640.1  peptidyl-prolyl cis-trans isomerase PASTICCINO1

      UniProtKB/TrEMBL
      A0A8J8XD90, B8AQ71, B9F8L3, Q0DRP2, Q10KX6
      Conserved Domains (4) summary
      COG0457
      Location:412 → 555
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:405 → 434
      TPR; TPR repeat [structural motif]
      pfam00254
      Location:49 → 149
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
      cl19519
      Location:173 → 262
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
    Nucleotide Protein
    Heading Accession and Version

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