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    LOC4347181 protein GAMETE EXPRESSED 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347181, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4347181
    Gene description
    protein GAMETE EXPRESSED 1
    Locus tag
    OSNPB_090442400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 3.5), leaves before flowering (RPKM 3.3) and 5 other tissues See more
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    Genomic context

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    See LOC4347181 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16443712..16448141)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase RIPK Neighboring gene oryzain gamma chain-like Neighboring gene probable GTP diphosphokinase RSH3, chloroplastic Neighboring gene ATP-dependent DNA helicase DDM1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein GAMETE EXPRESSED 1
    Names
    Os09g0442400
    P0046G12.23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      16443712..16448141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756137.2 → XP_015611623.1  protein GAMETE EXPRESSED 1

      UniProtKB/TrEMBL
      A0A0P0XNI0, A2Z1Q5, Q67UU1
      Conserved Domains (1) summary
      COG1196
      Location:178 → 427
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_015756139.2 → XP_015611625.1  protein GAMETE EXPRESSED 1

      UniProtKB/TrEMBL
      A0A0P0XNI0, A2Z1Q5, Q67UU1
      Conserved Domains (1) summary
      COG1196
      Location:178 → 427
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein
    Heading Accession and Version

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