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    MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 [ Gallus gallus (chicken) ]

    Gene ID: 421431, updated on 6-Jun-2024

    Summary

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    Symbol
    MDGA1provided by CGNC
    Full Name
    MAM domain containing glycosylphosphatidylinositol anchor 1provided by CGNC
    Primary source
    CGNC:7710
    See related
    Ensembl:ENSGALG00010021262
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See MDGA1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (29626603..29761962)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (29554081..29689480)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene zinc finger AN1-type containing 3 Neighboring gene uncharacterized LOC121110313 Neighboring gene translation initiation factor IF-2-like Neighboring gene coiled-coil domain containing 167 Neighboring gene cap methyltransferase 1 Neighboring gene ring finger protein 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MDGA1, an IgSF molecule containing a MAM domain, heterophilically associates with axon- and muscle-associated binding partners through distinct structural domains. Fujimura Y, et al. Brain Res, 2006 Jul 26. PMID 16782075
    2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MAM domain-containing glycosylphosphatidylinositol anchor protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398249.1 → NP_001385178.1  MAM domain-containing glycosylphosphatidylinositol anchor protein 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AB241390, BF724055, BU446195, BX263116, JAENSK010000063
      UniProtKB/Swiss-Prot
      Q0WYX8
      UniProtKB/TrEMBL
      A0A3Q3A2A3
      Related
      ENSGALP00010030738.1, ENSGALT00010051547.1
      Conserved Domains (6) summary
      smart00408
      Location:571 → 636
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:268 → 346
      IG_like; Immunoglobulin like
      pfam00629
      Location:767 → 931
      MAM; MAM domain, meprin/A5/mu
      pfam13927
      Location:459 → 534
      Ig_3; Immunoglobulin domain
      cd00096
      Location:470 → 473
      Ig; Ig strand A' [structural motif]
      cl11960
      Location:354 → 438
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      29626603..29761962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_006938650.1 RNA Sequence

    2. XR_006938651.1 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      29554081..29689480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_006933942.1 RNA Sequence

    2. XR_006933943.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001044647.1: Suppressed sequence

      Description
      NM_001044647.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WYX8.1 GenPept UniProtKB/Swiss-Prot:Q0WYX8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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