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    TRPC6 transient receptor potential cation channel subfamily C member 6 [ Gallus gallus (chicken) ]

    Gene ID: 418989, updated on 5-Mar-2024

    Summary

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    Symbol
    TRPC6provided by CGNC
    Full Name
    transient receptor potential cation channel subfamily C member 6provided by CGNC
    Primary source
    CGNC:12918
    See related
    Ensembl:ENSGALG00010007455
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TRPC6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (182891890..182987053)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (182940018..183034704)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene serine/arginine repetitive matrix protein 2-like Neighboring gene uncharacterized LOC121107267 Neighboring gene G2/M phase-specific E3 ubiquitin-protein ligase-like Neighboring gene uncharacterized LOC121107270 Neighboring gene progesterone receptor Neighboring gene Rho GTPase activating protein 42 Neighboring gene transfer RNA proline (anticodon AGG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol 1,4,5 trisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables store-operated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in manganese ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cation channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short transient receptor potential channel 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      182891890..182987053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004938840.5 → XP_004938897.4  short transient receptor potential channel 6 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XUZ1, A0A8V0XXR1
      Related
      ENSGALP00010009820.1, ENSGALT00010017781.1
      Conserved Domains (2) summary
      TIGR00870
      Location:130 → 919
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:180 → 207
      ANK; ANK repeat [structural motif]

    2. XM_040650423.2 → XP_040506357.1  short transient receptor potential channel 6 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y0R7
      Related
      ENSGALP00010009819.1, ENSGALT00010017779.1
      Conserved Domains (2) summary
      TIGR00870
      Location:130 → 843
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:180 → 207
      ANK; ANK repeat [structural motif]

    3. XM_417184.7 → XP_417184.4  short transient receptor potential channel 6 isoform X2

      UniProtKB/TrEMBL
      A0A1D5PFG9, A0A8V0XXQ6
      Related
      ENSGALP00010009818.1, ENSGALT00010017778.1
      Conserved Domains (2) summary
      TIGR00870
      Location:73 → 862
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:123 → 150
      ANK; ANK repeat [structural motif]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      182940018..183034704
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040658557.2 → XP_040514491.1  short transient receptor potential channel 6 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XXR1
      Conserved Domains (2) summary
      TIGR00870
      Location:130 → 919
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:180 → 207
      ANK; ANK repeat [structural motif]

    2. XM_040658559.2 → XP_040514493.1  short transient receptor potential channel 6 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y0R7
      Conserved Domains (2) summary
      TIGR00870
      Location:130 → 843
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:180 → 207
      ANK; ANK repeat [structural motif]

    3. XM_040658558.2 → XP_040514492.1  short transient receptor potential channel 6 isoform X2

      UniProtKB/TrEMBL
      A0A1D5PFG9, A0A8V0XXQ6
      Conserved Domains (2) summary
      TIGR00870
      Location:73 → 862
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:123 → 150
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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