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    LOC105374809 uncharacterized LOC105374809 [ Homo sapiens (human) ]

    Gene ID: 105374809, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105374809
    Gene description
    uncharacterized LOC105374809
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in fat (RPKM 1.3), lymph node (RPKM 1.2) and 25 other tissues See more
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    Genomic context

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    See LOC105374809 in Genome Data Viewer
    Location:
    2p12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (74918226..74958879, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (74927100..74967735, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11673 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11674 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:75061972-75062848 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:75064008-75064523 Neighboring gene Sharpr-MPRA regulatory region 11570 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16083 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:75082772-75083312 Neighboring gene HK2 divergent transcript Neighboring gene hexokinase 2 Neighboring gene long intergenic non-protein coding RNA 1291 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:75185356-75185856 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:75185857-75186357 Neighboring gene NANOG hESC enhancer GRCh37_chr2:75211079-75211580 Neighboring gene DNA polymerase epsilon 4, accessory subunit Neighboring gene uncharacterized LOC124907850 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11678 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11679 Neighboring gene tachykinin receptor 1 Neighboring gene microRNA 5000

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187875.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007400, AC104135

    2. NR_187876.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007400, AC104135

    3. NR_187877.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007400, AC104135

    4. NR_187878.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007400, AC104135

    5. NR_187879.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007400, AC104135

    6. NR_187880.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007400, AC104135

    7. NR_187881.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007400, AC104135

    8. NR_187882.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007400, AC104135

    9. NR_187883.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007400, AC104135

    10. NR_187884.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007400, AC104135

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      74918226..74958879 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      74927100..74967735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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