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    phat-4 ShKT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178812, updated on 12-Jun-2024

    Summary

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    Gene symbol
    phat-4
    Gene description
    ShKT domain-containing protein
    Locus tag
    CELE_T05B4.3
    See related
    AllianceGenome:WB:WBGene00020237
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in pharyngeal gland morphogenesis. Is expressed in g1AL; g1AR; g1P; g2L; and g2R. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See phat-4 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (4129904..4130909)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ShKT domain-containing protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Nuclear hormone receptor family member nhr-57 Neighboring gene Neur_chan_LBD domain-containing protein Neighboring gene Neurotransmitter-gated ion-channel ligand-binding domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An abundantly expressed mucin-like protein from Toxocara canis infective larvae: the precursor of the larval surface coat glycoproteins. Gems D, et al. Proc Natl Acad Sci U S A, 1996 Feb 20. PMID 8643687, Free PMC Article
    2. The HLH-6 transcription factor regulates C. elegans pharyngeal gland development and function. Smit RB, et al. PLoS Genet, 2008 Oct. PMID 18927627, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in nematode pharyngeal gland morphogenesis IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ShKT domain-containing protein
    NP_504152.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      4129904..4130909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071751.5 → NP_504152.1  ShKT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504152.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16424
      Conserved Domains (1) summary
      pfam01549
      Location:118 → 151
      ShK; ShK domain-like
    Nucleotide Protein
    Heading Accession and Version

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