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    Zfp781a zinc finger protein 781A [ Mus musculus (house mouse) ]

    Gene ID: 211135, updated on 2-Apr-2024

    Summary

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    Official Symbol
    Zfp781aprovided by MGI
    Official Full Name
    zinc finger protein 781Aprovided by MGI
    Primary source
    MGI:MGI:2444324
    See related
    Ensembl:ENSMUSG00000079038 AllianceGenome:MGI:2444324
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D130040H23Rik
    Summary
    Orthologous to human ZNF781 (zinc finger protein 781). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
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    Genomic context

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    See Zfp781a in Genome Data Viewer
    Location:
    8 B3.3; 8 33.88 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (69723714..69776105)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (69271060..69303384)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 930 Neighboring gene predicted gene, 33178 Neighboring gene membrane-associated ring finger (C3HC4) 5 pseudogene Neighboring gene STARR-seq mESC enhancer starr_21726 Neighboring gene STARR-positive B cell enhancer ABC_E2263 Neighboring gene STARR-seq mESC enhancer starr_21728 Neighboring gene STARR-seq mESC enhancer starr_21730 Neighboring gene STARR-positive B cell enhancer mm9_chr8:71852567-71852867 Neighboring gene eukaryotic translation initiation factor 1 pseudogene Neighboring gene predicted gene 10033

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC211135

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001384124.1 → NP_001371053.1  uncharacterized protein LOC211135 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AC117621
      Related
      ENSMUSP00000148399.2, ENSMUST00000212549.2
      Conserved Domains (4) summary
      COG5048
      Location:131 → 326
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:149 → 169
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:19 → 60
      KRAB; KRAB box
      pfam13465
      Location:385 → 410
      zf-H2C2_2; Zinc-finger double domain

    2. NM_172491.3 → NP_766079.1  uncharacterized protein LOC211135 isoform 2

      See identical proteins and their annotated locations for NP_766079.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate exon, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
      Source sequence(s)
      AC117621
      Consensus CDS
      CCDS52565.1
      UniProtKB/TrEMBL
      Q8BII3
      Related
      ENSMUSP00000077378.7, ENSMUST00000078257.7

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      69723714..69776105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004934788.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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