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    Ccdc127 coiled-coil domain containing 127 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 308060, updated on 13-Apr-2024

    Summary

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    Official Symbol
    Ccdc127provided by RGD
    Official Full Name
    coiled-coil domain containing 127provided by RGD
    Primary source
    RGD:735106
    See related
    Ensembl:ENSRNOG00000066093 AllianceGenome:RGD:735106
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD735106
    Summary
    Predicted to be integral component of membrane. Orthologous to human CCDC127 (coiled-coil domain containing 127). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Heart (RPKM 186.4), Muscle (RPKM 168.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc127 in Genome Data Viewer
    Location:
    1p11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (30757010..30764473, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (28928420..28935885, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (31538088..31545573, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L26, pseudogene 2 Neighboring gene leucine rich repeat containing 14B Neighboring gene succinate dehydrogenase complex flavoprotein subunit A Neighboring gene eukaryotic translation initiation factor 1, pseudogene 5 Neighboring gene programmed cell death 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC73017

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 127

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198766.2 → NP_942061.2  coiled-coil domain-containing protein 127

      Status: VALIDATED

      Source sequence(s)
      FM059534, JAXUCZ010000001
      UniProtKB/Swiss-Prot
      Q6PEB9
      UniProtKB/TrEMBL
      A0A8I6A8F9, A6JUU4
      Related
      ENSRNOP00000088745.1, ENSRNOT00000098265.1
      Conserved Domains (1) summary
      COG1196
      Location:46 → 190
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      30757010..30764473 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6PEB9.2 GenPept UniProtKB/Swiss-Prot:Q6PEB9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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