U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ccdc106b coiled-coil domain containing 106b [ Danio rerio (zebrafish) ]

    Gene ID: 503711, updated on 27-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ccdc106bprovided by ZNC
    Official Full Name
    coiled-coil domain containing 106bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050306-6
    See related
    Ensembl:ENSDARG00000058578 AllianceGenome:ZFIN:ZDB-GENE-050306-6
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ccdc106; im:6909208; zgc:113396
    Summary
    Predicted to be active in nucleoplasm. Orthologous to human CCDC106 (coiled-coil domain containing 106). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ccdc106b in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (10325367..10331024, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (10406240..10411938, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex, subunit 3b Neighboring gene U2 small nuclear RNA auxiliary factor 2b Neighboring gene transmembrane protein 238a Neighboring gene recoverin 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Early depletion of primordial germ cells in zebrafish promotes testis formation. Tzung KW, et al. Stem Cell Reports, 2015 Jan 13. PMID 25434820, Free PMC Article
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    coiled-coil domain containing 106b; coiled-coil domain-containing protein 106b
    Names
    coiled-coil domain containing 106

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013305.2 → NP_001013323.2  coiled-coil domain-containing protein 106b isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      BX950195
      UniProtKB/TrEMBL
      A0A8M1N4C8, Q1LUD6
      Related
      ENSDARP00000075906.4, ENSDART00000081465.7
      Conserved Domains (1) summary
      pfam15794
      Location:76 → 353
      CCDC106; Coiled-coil domain-containing protein 106

    2. NM_001312892.1 → NP_001299821.1  coiled-coil domain-containing protein 106b isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR which results in the use of a downstream AUG compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
      Source sequence(s)
      BX950195
      UniProtKB/TrEMBL
      A0A0R4IQP1, A0A8M1P6Z8
      Related
      ENSDARP00000136964.2, ENSDART00000171232.2
      Conserved Domains (1) summary
      pfam15794
      Location:58 → 335
      CCDC106; Coiled-coil domain-containing protein 106

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      10325367..10331024 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021468054.1 → XP_021323729.1  coiled-coil domain containing 106b isoform X1

      UniProtKB/TrEMBL
      A0A8M9PGD9
      Conserved Domains (1) summary
      pfam15794
      Location:128 → 232
      CCDC106; Coiled-coil domain-containing protein 106
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.