ccdc6a coiled-coil domain containing 6a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ccdc6aprovided by ZNC
Official Full Name: coiled-coil domain containing 6aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-7848
See related: Ensembl:ENSDARG00000043334 AllianceGenome:ZFIN:ZDB-GENE-030131-7848
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ccdc6; fj36e04; zgc:56563; zgc:77435; wu:fj36e04
Summary: Is expressed in female organism. Orthologous to human CCDC6 (coiled-coil domain containing 6). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 17

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (20673963..20695898, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (20654127..20676062, complement)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: coiled-coil domain-containing protein 6a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199985.2 → NP_956279.1 coiled-coil domain-containing protein 6a

See identical proteins and their annotated locations for NP_956279.1

Status: PROVISIONAL

Source sequence(s)

BC065606

UniProtKB/TrEMBL

A0A0R4IQ30, F6P7W4, Q7ZUC4

Related

ENSDARP00000063612.6, ENSDART00000063613.8

Conserved Domains (2) summary

pfam09755
Location:49 → 334

DUF2046; Uncharacterized conserved protein H4 (DUF2046)

cl00259
Location:115 → 204

Sm_like; Sm and related proteins