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    F25E2.2 Secreted protein;ShKT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 180428, updated on 5-May-2024

    Summary

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    Gene symbol
    F25E2.2
    Gene description
    Secreted protein;ShKT domain-containing protein
    Primary source
    WormBase:WBGene00017780
    Locus tag
    CELE_F25E2.2
    See related
    AllianceGenome:WB:WBGene00017780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See F25E2.2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    11
    Sequence:
    Chromosome: X; NC_003284.9 (806991..810794, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene AT hook Transcription Factor family Neighboring gene G_PROTEIN_RECEP_F1_2 domain-containing protein Neighboring gene Acyl-CoA thioesterase II Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Galectin LEC-1 plays a defensive role against damage due to oxidative stress in Caenorhabditis elegans. Takeuchi T, et al. J Biochem, 2013 Nov. PMID 23935187
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Secreted protein;ShKT domain-containing protein
    NP_001256978.1
    • Confirmed by transcript evidence
    NP_001256979.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      806991..810794 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001270049.3 → NP_001256978.1  ShKT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256978.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G4SF79

    2. NM_001270050.4 → NP_001256979.1  Secreted protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256979.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19780
    Nucleotide Protein
    Heading Accession and Version

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