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    • Showing Current items.

    F01D5.1 ShKT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175049, updated on 7-Sep-2023

    Summary

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    Gene symbol
    F01D5.1
    Gene description
    ShKT domain-containing protein
    Primary source
    WormBase:WBGene00008492
    Locus tag
    CELE_F01D5.1
    See related
    AllianceGenome:WB:WBGene00008492
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in innate immune response. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See F01D5.1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003280.10 (13996958..13997581, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ShKT domain-containing protein Neighboring gene pseudo Neighboring gene ShKT domain-containing protein Neighboring gene ShKT domain-containing protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
    2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response HEP PubMed 

    General protein information

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    Preferred Names
    ShKT domain-containing protein
    NP_496932.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      13996958..13997581 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064531.11 → NP_496932.1  ShKT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496932.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XVB1
    Nucleotide Protein
    Heading Accession and Version

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