attf-5 AT hook Transcription Factor family [Caenorhabditis elegans] - Gene

Summary

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Gene symbol: attf-5
Gene description: AT hook Transcription Factor family
Primary source: WormBase:WBGene00020214
Locus tag: CELE_T04G9.1
See related: AllianceGenome:WB:WBGene00020214
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Is expressed widely. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See attf-5 in Genome Data Viewer

Location:: chromosome: X

Exon count:: 14

Sequence:: Chromosome: X; NC_003284.9 (788353..796154)

Chromosome X - NC_003284.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

STS6-108 (e-PCR)
- UniSTS:242486

T04G9.1 (e-PCR)
- UniSTS:310656

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables transcription coactivator activity	IBA Inferred from Biological aspect of Ancestor more info
enables transcription factor binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in positive regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of mediator complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: AT hook Transcription Factor family

NP_001368603.1

Product from WormBase gene class attf;
Confirmed by transcript evidence

NP_001379608.1

Product from WormBase gene class attf;
Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

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Reference assembly

Genomic

NC_003284.9 Reference assembly

Range

788353..796154

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001392721.1 → NP_001379608.1 AT hook Transcription Factor family [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

Q22173

Conserved Domains (1) summary

PHA03247
Location:75 → 169

PHA03247; large tegument protein UL36; Provisional
NM_001380897.2 → NP_001368603.1 AT hook Transcription Factor family [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

A0A168HBV3

Conserved Domains (2) summary

PHA03247
Location:75 → 169

PHA03247; large tegument protein UL36; Provisional

cl27202
Location:478 → 650

Mpp10; Mpp10 protein