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    Zcchc14 zinc finger CCHC-type containing 14 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 365018, updated on 13-Apr-2024

    Summary

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    Official Symbol
    Zcchc14provided by RGD
    Official Full Name
    zinc finger CCHC-type containing 14provided by RGD
    Primary source
    RGD:1309494
    See related
    Ensembl:ENSRNOG00000018226 AllianceGenome:RGD:1309494
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309494
    Summary
    Predicted to enable nucleic acid binding activity; phosphatidylinositol binding activity; and zinc ion binding activity. Orthologous to human ZCCHC14 (zinc finger CCHC-type containing 14). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 118.6), Lung (RPKM 116.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zcchc14 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (66582800..66627136, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (49674185..49718004, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (53644500..53688624, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) 13 Neighboring gene microtubule-associated protein 1 light chain 3 beta Neighboring gene uncharacterized LOC134483656 Neighboring gene uncharacterized LOC102550418 Neighboring gene small nucleolar RNA SNORA72

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCHC domain-containing protein 14
    Names
    zinc finger, CCHC domain containing 14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427306.1 → NP_001414235.1  zinc finger CCHC domain-containing protein 14

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      M0R4K3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      66582800..66627136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039098193.1 → XP_038954121.1  zinc finger CCHC domain-containing protein 14 isoform X2

      Conserved Domains (2) summary
      cd09558
      Location:413 → 477
      SAM_ZCCH14; SAM domain of ZCCH14 subfamily
      smart00343
      Location:1022 → 1037
      ZnF_C2HC; zinc finger

    2. XM_006255732.3 → XP_006255794.1  zinc finger CCHC domain-containing protein 14 isoform X1

      Conserved Domains (4) summary
      cd09558
      Location:437 → 501
      SAM_ZCCH14; SAM domain of ZCCH14 subfamily
      smart00454
      Location:444 → 495
      SAM; Sterile alpha motif
      pfam00098
      Location:1046 → 1061
      zf-CCHC; Zinc knuckle
      cl02563
      Location:261 → 342
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    Nucleotide Protein Strain
    Heading Accession and Version

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