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    Tstd3 thiosulfate sulfurtransferase like domain containing 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500420, updated on 6-Jun-2024

    Summary

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    Official Symbol
    Tstd3provided by RGD
    Official Full Name
    thiosulfate sulfurtransferase like domain containing 3provided by RGD
    Primary source
    RGD:1563572
    See related
    Ensembl:ENSRNOG00000028185 AllianceGenome:RGD:1563572
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human TSTD3 (thiosulfate sulfurtransferase like domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 199.9), Adrenal (RPKM 194.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tstd3 in Genome Data Viewer
    Location:
    5q21
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (40091438..40101509, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (35294652..35304093, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (35892783..35902243, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene PR/SET domain 13 Neighboring gene uncharacterized LOC120102842 Neighboring gene cyclin C Neighboring gene uncharacterized LOC134478949 Neighboring gene ubiquitin specific peptidase 45 Neighboring gene large ribosomal subunit protein eL30-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3
    Names
    thiosulfate sulfurtransferase (rhodanese)-like domain containing 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100797.1 → NP_001094267.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3

      Status: VALIDATED

      Source sequence(s)
      BC089864
      UniProtKB/TrEMBL
      A6IIE6, G3V8W9, Q3SWT2
      Related
      ENSRNOP00000029537.3, ENSRNOT00000030559.6
      Conserved Domains (1) summary
      cd01519
      Location:43 → 148
      RHOD_HSP67B2; Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      40091438..40101509 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063288207.1 → XP_063144277.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A6IIE6, G3V8W9, Q3SWT2
    Nucleotide Protein Strain
    Heading Accession and Version

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