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    zgc:136864 zgc:136864 [ Danio rerio (zebrafish) ]

    Gene ID: 677749, updated on 27-Mar-2024

    Summary

    Official Symbol
    zgc:136864provided by ZNC
    Official Full Name
    zgc:136864provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060331-129
    See related
    Ensembl:ENSDARG00000059816 AllianceGenome:ZFIN:ZDB-GENE-060331-129
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human C19orf53 (chromosome 19 open reading frame 53). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    See zgc:136864 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (55007272..55008890, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (54329621..54331239, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene KH-type splicing regulatory protein Neighboring gene solute carrier family 25 member 23a Neighboring gene si:ch211-196h16.12 Neighboring gene VPS54 subunit of GARP complex Neighboring gene pellino E3 ubiquitin protein ligase 1a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC136864

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    UPF0390 protein zgc136864
    Names
    leydig cell tumor 10 kDa protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040044.2NP_001035133.1  UPF0390 protein zgc136864

      See identical proteins and their annotated locations for NP_001035133.1

      Status: VALIDATED

      Source sequence(s)
      BC114294, EH439972, FQ323126
      UniProtKB/Swiss-Prot
      Q24JV4
      Related
      ENSDARP00000078007.5, ENSDART00000083572.6
      Conserved Domains (1) summary
      pfam09495
      Location:181
      DUF2462; Protein of unknown function (DUF2462)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      55007272..55008890 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)