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    jac1 jacalin 1 [ Danio rerio (zebrafish) ]

    Gene ID: 336485, updated on 27-Mar-2024

    Summary

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    Official Symbol
    jac1provided by ZNC
    Official Full Name
    jacalin 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8429
    See related
    AllianceGenome:ZFIN:ZDB-GENE-030131-8429
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb11f10; wu:fb11f10; si:dkeyp-32g11.7
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    Genomic context

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    See jac1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (8415487..8417388, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (8169529..8171339, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene jacalin 10 Neighboring gene jacalin 11 Neighboring gene natterin-like protein Neighboring gene si:dkeyp-32g11.8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolutionary analysis of the jacalin-related lectin family genes in 11 fishes. Cao J, et al. Fish Shellfish Immunol, 2016 Sep. PMID 27514782
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    natterin-like protein; uncharacterized protein LOC336485

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      8415487..8417388 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005166359.4 → XP_005166416.2  natterin-like protein isoform X2

      UniProtKB/TrEMBL
      A0A140LGS3, A0A8M2BDT1
      Conserved Domains (2) summary
      cd09302
      Location:61 → 185
      Jacalin_like; Jacalin-like lectin domain
      cl03107
      Location:203 → 331
      ETX_MTX2; Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2

    2. XM_021477701.1 → XP_021333376.1  natterin-like protein isoform X1

      UniProtKB/TrEMBL
      A0A140LGS3, A0A8M9QCF5
      Conserved Domains (2) summary
      cd09302
      Location:62 → 186
      Jacalin_like; Jacalin-like lectin domain
      cl03107
      Location:204 → 332
      ETX_MTX2; Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2
    Nucleotide Protein
    Heading Accession and Version

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