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    CIDECP1 CIDEC pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 152302, updated on 10-Oct-2023

    Summary

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    Official Symbol
    CIDECP1provided by HGNC
    Official Full Name
    CIDEC pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:24230
    See related
    Ensembl:ENSG00000186162 AllianceGenome:HGNC:24230
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CICE; CIDECP
    Expression
    Ubiquitous expression in bone marrow (RPKM 9.3), brain (RPKM 7.9) and 25 other tissues See more
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    Genomic context

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    See CIDECP1 in Genome Data Viewer
    Location:
    3p25.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (10017553..10026136, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (10009553..10018134, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (10059237..10067820, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ER membrane protein complex subunit 3 Neighboring gene EMC3 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14053 Neighboring gene CYCS pseudogene 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:10052831-10053356 Neighboring gene MARK2 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:10066312-10066948 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:10067584-10068219 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:10068220-10068854 Neighboring gene 3p25 FANCD2 Alu-mediated recombination region Neighboring gene FA complementation group D2 Neighboring gene RNA, U6 small nuclear 670, pseudogene Neighboring gene CYCS pseudogene 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. Fei T, et al. Proc Natl Acad Sci U S A, 2017 Jun 27. PMID 28611215, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • cell death inducing DFFA like effector c pseudogene 1
    • cell death-inducing CIDE-like effector pseudogene
    • cell death-inducing DFFA-like effector c pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002786.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AF279614
      Related
      ENST00000433871.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      10017553..10026136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      10009553..10018134 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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