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    ALG1L1P ALG1 like 1, pseudogene [ Homo sapiens (human) ]

    Gene ID: 200810, updated on 5-Mar-2024

    Summary

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    Official Symbol
    ALG1L1Pprovided by HGNC
    Official Full Name
    ALG1 like 1, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:33721
    See related
    Ensembl:ENSG00000291096 AllianceGenome:HGNC:33721
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ALG1L; ALG1L1
    Summary
    Predicted to enable mannosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be active in endoplasmic reticulum. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See ALG1L1P in Genome Data Viewer
    Location:
    3q21.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (125929272..125990537, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (128661692..128722896, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (125648115..125709380, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene long intergenic non-protein coding RNA 2614 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 4 Neighboring gene NANOG hESC enhancer GRCh37_chr3:125609269-125610164 Neighboring gene uncharacterized LOC102723696 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14669 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14670 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:125635188-125635778 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:125650535-125651035 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:125650034-125650534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:125655344-125655844 Neighboring gene family with sequence similarity 86, member A pseudogene Neighboring gene FBRSL1 pseudogene 1 Neighboring gene rhophilin associated tail protein 1B Neighboring gene ReSE screen-validated silencer GRCh37_chr3:125736296-125736478 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:125740258-125741040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:125744116-125744616 Neighboring gene solute carrier family 41 member 3 Neighboring gene uncharacterized LOC124909425 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:125777675-125778174 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14672 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14673 Neighboring gene ALDH1L1 antisense RNA 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study. Sung YJ, et al. Am J Hypertens, 2015 Mar. PMID 25189868, Free PMC Article
    2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. Lamesch P, et al. Genomics, 2007 Mar. PMID 17207965, Free PMC Article
    3. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Gene-Smoking Interactions Identify Several Novel Blood Pressure Loci in the Framingham Heart Study.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Other Names

    • ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase like (pseudogene)
    • asparagine-linked glycosylation 1-like 1
    • beta-1,4-mannosyltransferase-like
    • putative glycosyltransferase ALG1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_171194.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092903

    2. NR_171195.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092903
      Related
      ENST00000340333.7

    3. NR_171196.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092903
      Related
      ENST00000702240.1

    4. NR_171197.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092903
      Related
      ENST00000686211.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      125929272..125990537 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      128661692..128722896 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001015050.3: Suppressed sequence

      Description
      NM_001015050.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    2. NM_001195223.2: Suppressed sequence

      Description
      NM_001195223.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    3. NM_001385064.1: Suppressed sequence

      Description
      NM_001385064.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    4. NM_001385066.1: Suppressed sequence

      Description
      NM_001385066.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    5. NM_001385067.1: Suppressed sequence

      Description
      NM_001385067.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    6. NM_001385068.1: Suppressed sequence

      Description
      NM_001385068.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version

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