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    cnc-7 CaeNaCin (Caenorhabditis bacteriocin) [ Caenorhabditis elegans ]

    Gene ID: 180337, updated on 12-Jun-2024

    Summary

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    Gene symbol
    cnc-7
    Gene description
    CaeNaCin (Caenorhabditis bacteriocin)
    Locus tag
    CELE_F53H2.2
    See related
    AllianceGenome:WB:WBGene00010005
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See cnc-7 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    2
    Sequence:
    Chromosome: V; NC_003283.11 (20394073..20394735)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Cilia- and flagella-associated protein 251-like Neighboring gene Protein containing ALS2cr12 (ALS2CR12) signature;SH2 domain-containing protein Neighboring gene ncRNA Neighboring gene WW domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene CAAX prenyl protease 2 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Assessment of nanopolystyrene toxicity under fungal infection condition in Caenorhabditis elegans. Li D, et al. Ecotoxicol Environ Saf, 2020 Jul 1. PMID 32302863
    2. Candida albicans infection of Caenorhabditis elegans induces antifungal immune defenses. Pukkila-Worley R, et al. PLoS Pathog, 2011 Jun. PMID 21731485, Free PMC Article
    3. Anti-fungal innate immunity in C. elegans is enhanced by evolutionary diversification of antimicrobial peptides. Pujol N, et al. PLoS Pathog, 2008 Jul 18. PMID 18636113, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    CaeNaCin (Caenorhabditis bacteriocin)
    NP_507930.1
    • Product from WormBase gene class cnc;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      20394073..20394735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_075529.5 → NP_507930.1  CaeNaCin (Caenorhabditis bacteriocin) [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_507930.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U3E5
    Nucleotide Protein
    Heading Accession and Version

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