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    Gpr88 G-protein coupled receptor 88 [ Mus musculus (house mouse) ]

    Gene ID: 64378, updated on 12-May-2024

    Summary

    Official Symbol
    Gpr88provided by MGI
    Official Full Name
    G-protein coupled receptor 88provided by MGI
    Primary source
    MGI:MGI:1927653
    See related
    Ensembl:ENSMUSG00000068696 AllianceGenome:MGI:1927653
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Strg
    Summary
    Enables cytoskeletal motor activity. Involved in motor learning. Acts upstream of or within locomotory behavior; neuromuscular process controlling balance; and neuronal action potential. Predicted to be located in several cellular components, including cilium; nucleus; and plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; ear; genitourinary system; and skeleton. Orthologous to human GPR88 (G protein-coupled receptor 88). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in cortex adult (RPKM 16.3), CNS E18 (RPKM 8.2) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Gpr88 in Genome Data Viewer
    Location:
    3 50.23 cM; 3 G1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (116043304..116047123, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (116249654..116253540, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26544 Neighboring gene STARR-seq mESC enhancer starr_08770 Neighboring gene predicted gene, 31651 Neighboring gene STARR-seq mESC enhancer starr_08771 Neighboring gene predicted gene, 46839 Neighboring gene STARR-seq mESC enhancer starr_08772 Neighboring gene CDC14 cell division cycle 14A Neighboring gene STARR-seq mESC enhancer starr_08773 Neighboring gene STARR-positive B cell enhancer ABC_E10208 Neighboring gene STARR-seq mESC enhancer starr_08775 Neighboring gene STARR-positive B cell enhancer ABC_E2097 Neighboring gene STARR-positive B cell enhancer ABC_E3463 Neighboring gene predicted gene, 40125

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (6)  1 citation

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled photoreceptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables G protein-coupled receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    enables beta2-adrenergic receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables cytoskeletal motor activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables transmembrane signaling receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in ciliary membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cilium ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    G protein-coupled receptor 88
    Names
    probable G-protein coupled receptor 88
    striatum-specific G-protein coupled receptor

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001411424.1NP_001398353.1  G protein-coupled receptor 88

      Status: VALIDATED

      Source sequence(s)
      AC122888
      UniProtKB/Swiss-Prot
      Q9EPB7
      UniProtKB/TrEMBL
      B2RXU4
    2. NM_001411425.1NP_001398354.1  G protein-coupled receptor 88

      Status: VALIDATED

      Source sequence(s)
      AC122888
      UniProtKB/Swiss-Prot
      Q9EPB7
      UniProtKB/TrEMBL
      B2RXU4
    3. NM_001411426.1NP_001398355.1  G protein-coupled receptor 88

      Status: VALIDATED

      Source sequence(s)
      AC122888
      UniProtKB/Swiss-Prot
      Q9EPB7
      UniProtKB/TrEMBL
      B2RXU4
    4. NM_022427.3NP_071872.1  G protein-coupled receptor 88

      See identical proteins and their annotated locations for NP_071872.1

      Status: VALIDATED

      Source sequence(s)
      AC122888
      Consensus CDS
      CCDS38610.1
      UniProtKB/Swiss-Prot
      Q9EPB7
      UniProtKB/TrEMBL
      B2RXU4
      Related
      ENSMUSP00000087959.6, ENSMUST00000090473.7
      Conserved Domains (2) summary
      cd14964
      Location:3458
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:33347
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      116043304..116047123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)