U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Eif4g1 eukaryotic translation initiation factor 4, gamma 1 [ Mus musculus (house mouse) ]

    Gene ID: 208643, updated on 9-May-2024

    Summary

    Official Symbol
    Eif4g1provided by MGI
    Official Full Name
    eukaryotic translation initiation factor 4, gamma 1provided by MGI
    Primary source
    MGI:MGI:2384784
    See related
    Ensembl:ENSMUSG00000045983 AllianceGenome:MGI:2384784
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    eIF4GI; eIF-4G1; eIF-4G 1; E030015G23Rik; eIF-4-gamma 1
    Summary
    This gene encodes a member of the eukaryotic translation initiation factors (eIF) that play important roles in translation initiation by mediating recruitment of additional initiation factors and providing a scaffold for ribosome/mRNA-bridging. Along with eIF4A and eIF4E, the encoded protein forms the eIF4F complex that bridges the 5' UTR with the polyadenylated 3' UTR resulting in mRNA circularization, enhanced translation initiation and mRNA stability. Through its association with eIF3, the encoded protein mediates recruitment of the 43S pre-initiation complex to mRNA. Alternative splicing of this gene results in multiple transcript variants. Pseudogenes for this gene have been identified on chromosomes 2 and 13. [provided by RefSeq, Jan 2015]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 72.7), limb E14.5 (RPKM 65.1) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Eif4g1 in Genome Data Viewer
    Location:
    16 A3; 16 12.49 cM
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (20491457..20511633)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (20672720..20692883)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 Neighboring gene eukaryotic translation elongation factor 1 gamma pseudogene Neighboring gene small nucleolar RNA, C/D box 66 Neighboring gene family with sequence similarity 131, member A Neighboring gene STARR-seq mESC enhancer starr_40329 Neighboring gene chloride channel, voltage-sensitive 2 Neighboring gene STARR-positive B cell enhancer ABC_E1489 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide H

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC37551, MGC90776

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables eukaryotic initiation factor 4E binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables mRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables translation factor activity, RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables translation initiation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables translation initiation factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within behavioral fear response IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in cellular response to nutrient levels ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in energy homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in macromolecule biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in miRNA-mediated gene silencing by inhibition of translation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of autophagy ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of peptidyl-threonine phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of neuron differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of G1/S transition of mitotic cell cycle ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell growth ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of eukaryotic translation initiation factor 4F complex assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of mRNA cap binding ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of neuron differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of peptidyl-serine phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of protein localization to cell periphery ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of protein metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of translation in response to endoplasmic reticulum stress ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of presynapse assembly ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of translation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of translational initiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in translation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in translational initiation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in translational initiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in translational initiation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasmic stress granule ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of eukaryotic translation initiation factor 4F complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of eukaryotic translation initiation factor 4F complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of eukaryotic translation initiation factor 4F complex NAS
    Non-traceable Author Statement
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in postsynapse ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribosome ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    eukaryotic translation initiation factor 4 gamma 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001304432.2 → NP_001291361.1  eukaryotic translation initiation factor 4 gamma 1 isoform c

      See identical proteins and their annotated locations for NP_001291361.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' coding region and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform c), compared to isoform a.
      Source sequence(s)
      AC087898
      Consensus CDS
      CCDS84213.1
      UniProtKB/TrEMBL
      A0A0J9YUS5
      Related
      ENSMUSP00000111123.2, ENSMUST00000115463.8
      Conserved Domains (3) summary
      cd11559
      Location:1427 → 1556
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      pfam02847
      Location:1228 → 1340
      MA3; MA3 domain
      pfam02854
      Location:758 → 986
      MIF4G; MIF4G domain
    2. NM_001403460.1 → NP_001390389.1  eukaryotic translation initiation factor 4 gamma 1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC087898
      UniProtKB/TrEMBL
      E9PVC5
      Related
      ENSMUSP00000111121.2, ENSMUST00000115461.8
    3. NM_001403461.1 → NP_001390390.1  eukaryotic translation initiation factor 4 gamma 1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC087898
      UniProtKB/TrEMBL
      E9PVC5
    4. NM_001403462.1 → NP_001390391.1  eukaryotic translation initiation factor 4 gamma 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC087898
      UniProtKB/TrEMBL
      E9Q9E1
      Related
      ENSMUSP00000073506.6, ENSMUST00000073840.12
    5. NM_001403463.1 → NP_001390392.1  eukaryotic translation initiation factor 4 gamma 1 isoform c

      Status: VALIDATED

      Source sequence(s)
      AC087898
    6. NM_001403464.1 → NP_001390393.1  eukaryotic translation initiation factor 4 gamma 1 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC087898
    7. NM_001403465.1 → NP_001390394.1  eukaryotic translation initiation factor 4 gamma 1 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC087898
    8. NM_001403466.1 → NP_001390395.1  eukaryotic translation initiation factor 4 gamma 1 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC087898
      UniProtKB/TrEMBL
      E9PVC6
    9. NM_001403467.1 → NP_001390396.1  eukaryotic translation initiation factor 4 gamma 1 isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC087898
    10. NM_001403468.1 → NP_001390397.1  eukaryotic translation initiation factor 4 gamma 1 isoform 9

      Status: VALIDATED

      Source sequence(s)
      AC087898
      Related
      ENSMUST00000132320.8
    11. NM_145941.4 → NP_666053.2  eukaryotic translation initiation factor 4 gamma 1 isoform a

      See identical proteins and their annotated locations for NP_666053.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
      Source sequence(s)
      AC087898
      Consensus CDS
      CCDS28055.1
      UniProtKB/Swiss-Prot
      Q6NZJ6, Q6NZN8, Q8BW99
      UniProtKB/TrEMBL
      A0A0J9YUS5
      Related
      ENSMUSP00000047678.8, ENSMUST00000044783.14
      Conserved Domains (5) summary
      cd11559
      Location:1441 → 1570
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:4 → 463
      PHA03247; large tegument protein UL36; Provisional
      TIGR00600
      Location:373 → 612
      rad2; DNA excision repair protein (rad2)
      pfam02847
      Location:1242 → 1354
      MA3; MA3 domain
      pfam02854
      Location:765 → 993
      MIF4G; MIF4G domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      20491457..20511633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006521935.2 → XP_006521998.1  eukaryotic translation initiation factor 4 gamma 1 isoform X1

      See identical proteins and their annotated locations for XP_006521998.1

      UniProtKB/TrEMBL
      A0A0J9YUS5
      Conserved Domains (5) summary
      cd11559
      Location:1442 → 1571
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:4 → 463
      PHA03247; large tegument protein UL36; Provisional
      TIGR00600
      Location:373 → 612
      rad2; DNA excision repair protein (rad2)
      pfam02847
      Location:1243 → 1355
      MA3; MA3 domain
      pfam02854
      Location:766 → 994
      MIF4G; MIF4G domain
    2. XM_006521937.2 → XP_006522000.1  eukaryotic translation initiation factor 4 gamma 1 isoform X2

      See identical proteins and their annotated locations for XP_006522000.1

      UniProtKB/Swiss-Prot
      Q6NZJ6, Q6NZN8, Q8BW99
      UniProtKB/TrEMBL
      A0A0J9YUS5
      Conserved Domains (5) summary
      cd11559
      Location:1441 → 1570
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:4 → 463
      PHA03247; large tegument protein UL36; Provisional
      TIGR00600
      Location:373 → 612
      rad2; DNA excision repair protein (rad2)
      pfam02847
      Location:1242 → 1354
      MA3; MA3 domain
      pfam02854
      Location:765 → 993
      MIF4G; MIF4G domain
    3. XM_011245861.2 → XP_011244163.1  eukaryotic translation initiation factor 4 gamma 1 isoform X5

      UniProtKB/TrEMBL
      A0A0J9YUS5
      Conserved Domains (4) summary
      cd11559
      Location:1432 → 1561
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:7 → 560
      PHA03247; large tegument protein UL36; Provisional
      pfam02847
      Location:1233 → 1345
      MA3; MA3 domain
      pfam02854
      Location:756 → 984
      MIF4G; MIF4G domain
    4. XM_030249023.2 → XP_030104883.1  eukaryotic translation initiation factor 4 gamma 1 isoform X6

      UniProtKB/TrEMBL
      A0A0J9YUS5
      Conserved Domains (4) summary
      cd11559
      Location:1431 → 1560
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:7 → 560
      PHA03247; large tegument protein UL36; Provisional
      pfam02847
      Location:1232 → 1344
      MA3; MA3 domain
      pfam02854
      Location:755 → 983
      MIF4G; MIF4G domain
    5. XM_006521940.5 → XP_006522003.1  eukaryotic translation initiation factor 4 gamma 1 isoform X4

      UniProtKB/TrEMBL
      A0A0J9YUS5, E9Q9E1
      Conserved Domains (5) summary
      cd11559
      Location:1434 → 1563
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:4 → 456
      PHA03247; large tegument protein UL36; Provisional
      TIGR00600
      Location:366 → 605
      rad2; DNA excision repair protein (rad2)
      pfam02847
      Location:1235 → 1347
      MA3; MA3 domain
      pfam02854
      Location:758 → 986
      MIF4G; MIF4G domain
    6. XM_006521944.4 → XP_006522007.1  eukaryotic translation initiation factor 4 gamma 1 isoform X10

      UniProtKB/TrEMBL
      A0A0J9YUS5
      Conserved Domains (5) summary
      cd11559
      Location:1395 → 1524
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:2 → 523
      PHA03247; large tegument protein UL36; Provisional
      pfam05109
      Location:156 → 415
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam02847
      Location:1196 → 1308
      MA3; MA3 domain
      pfam02854
      Location:719 → 947
      MIF4G; MIF4G domain
    7. XM_006521943.2 → XP_006522006.1  eukaryotic translation initiation factor 4 gamma 1 isoform X9

      UniProtKB/TrEMBL
      A0A0J9YUS5
      Conserved Domains (4) summary
      cd11559
      Location:1402 → 1531
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:20 → 530
      PHA03247; large tegument protein UL36; Provisional
      pfam02847
      Location:1203 → 1315
      MA3; MA3 domain
      pfam02854
      Location:726 → 954
      MIF4G; MIF4G domain
    8. XM_036159852.1 → XP_036015745.1  eukaryotic translation initiation factor 4 gamma 1 isoform X11

      UniProtKB/TrEMBL
      A0A0J9YUS5, E9PVC6
      Related
      ENSMUSP00000111117.2, ENSMUST00000115457.8
      Conserved Domains (5) summary
      cd11559
      Location:1394 → 1523
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:2 → 523
      PHA03247; large tegument protein UL36; Provisional
      pfam05109
      Location:156 → 415
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam02847
      Location:1195 → 1307
      MA3; MA3 domain
      pfam02854
      Location:718 → 946
      MIF4G; MIF4G domain
    9. XM_036159855.1 → XP_036015748.1  eukaryotic translation initiation factor 4 gamma 1 isoform X14

      UniProtKB/TrEMBL
      A0A0J9YUS5
      Conserved Domains (5) summary
      cd11559
      Location:1384 → 1513
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      TIGR00600
      Location:316 → 555
      rad2; DNA excision repair protein (rad2)
      pfam05109
      Location:146 → 405
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam02847
      Location:1185 → 1297
      MA3; MA3 domain
      pfam02854
      Location:708 → 936
      MIF4G; MIF4G domain
    10. XM_006521936.3 → XP_006521999.1  eukaryotic translation initiation factor 4 gamma 1 isoform X1

      See identical proteins and their annotated locations for XP_006521999.1

      UniProtKB/TrEMBL
      A0A0J9YUS5
      Conserved Domains (5) summary
      cd11559
      Location:1442 → 1571
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:4 → 463
      PHA03247; large tegument protein UL36; Provisional
      TIGR00600
      Location:373 → 612
      rad2; DNA excision repair protein (rad2)
      pfam02847
      Location:1243 → 1355
      MA3; MA3 domain
      pfam02854
      Location:766 → 994
      MIF4G; MIF4G domain
    11. XM_030249025.2 → XP_030104885.1  eukaryotic translation initiation factor 4 gamma 1 isoform X9

      UniProtKB/TrEMBL
      A0A0J9YUS5
      Conserved Domains (4) summary
      cd11559
      Location:1402 → 1531
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:20 → 530
      PHA03247; large tegument protein UL36; Provisional
      pfam02847
      Location:1203 → 1315
      MA3; MA3 domain
      pfam02854
      Location:726 → 954
      MIF4G; MIF4G domain
    12. XM_006521945.2 → XP_006522008.1  eukaryotic translation initiation factor 4 gamma 1 isoform X12

      UniProtKB/TrEMBL
      A0A0J9YUS5
      Conserved Domains (4) summary
      cd11559
      Location:1392 → 1521
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:73 → 520
      PHA03247; large tegument protein UL36; Provisional
      pfam02847
      Location:1193 → 1305
      MA3; MA3 domain
      pfam02854
      Location:716 → 944
      MIF4G; MIF4G domain
    13. XM_030249026.2 → XP_030104886.1  eukaryotic translation initiation factor 4 gamma 1 isoform X10

      UniProtKB/TrEMBL
      A0A0J9YUS5
      Conserved Domains (5) summary
      cd11559
      Location:1395 → 1524
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:2 → 523
      PHA03247; large tegument protein UL36; Provisional
      pfam05109
      Location:156 → 415
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam02847
      Location:1196 → 1308
      MA3; MA3 domain
      pfam02854
      Location:719 → 947
      MIF4G; MIF4G domain
    14. XM_036159856.1 → XP_036015749.1  eukaryotic translation initiation factor 4 gamma 1 isoform X16

      UniProtKB/TrEMBL
      A0A0J9YUS5
      Related
      ENSMUSP00000144320.2, ENSMUST00000143939.8
      Conserved Domains (4) summary
      cd11559
      Location:1347 → 1476
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:19 → 476
      PHA03247; large tegument protein UL36; Provisional
      pfam02847
      Location:1148 → 1260
      MA3; MA3 domain
      pfam02854
      Location:671 → 899
      MIF4G; MIF4G domain
    15. XM_030249027.2 → XP_030104887.1  eukaryotic translation initiation factor 4 gamma 1 isoform X17

      UniProtKB/TrEMBL
      A0A0J9YUS5
      Conserved Domains (4) summary
      cd11559
      Location:1338 → 1467
      W2_eIF4G1_like; C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins
      PHA03247
      Location:19 → 466
      PHA03247; large tegument protein UL36; Provisional
      pfam02847
      Location:1139 → 1251
      MA3; MA3 domain
      pfam02854
      Location:662 → 890
      MIF4G; MIF4G domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001005331.1: Suppressed sequence

      Description
      NM_001005331.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.