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    cuedc1a CUE domain containing 1a [ Danio rerio (zebrafish) ]

    Gene ID: 768297, updated on 27-Mar-2024

    Summary

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    Official Symbol
    cuedc1aprovided by ZNC
    Official Full Name
    CUE domain containing 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061027-344
    See related
    Ensembl:ENSDARG00000068716 AllianceGenome:ZFIN:ZDB-GENE-061027-344
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:153423
    Summary
    Predicted to enable ubiquitin binding activity. Orthologous to human CUEDC1 (CUE domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See cuedc1a in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (37137398..37167448)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (37193655..37223690)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene myosin XVIIIAa Neighboring gene vascular endothelial zinc finger 1a Neighboring gene kinase suppressor of ras 1a Neighboring gene neurofibromin 1b Neighboring gene uncharacterized LOC101886660

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum. Takeuchi M, et al. J Comp Neurol, 2017 May 1. PMID 27615194
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC153423

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    CUE domain containing 1a; CUE domain-containing protein 1a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077461.1 → NP_001070929.1  CUE domain-containing protein 1a

      See identical proteins and their annotated locations for NP_001070929.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124347
      UniProtKB/TrEMBL
      Q05AM9
      Related
      ENSDARP00000116146.1, ENSDART00000131777.2
      Conserved Domains (1) summary
      cd14366
      Location:35 → 76
      CUE_CUED1; CUE domain found in CUE domain-containing protein 1 (CUED1) and similar proteins

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      37137398..37167448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005169171.4 → XP_005169228.1  CUE domain containing 1a isoform X3

      UniProtKB/TrEMBL
      A0A8M2BGI1
      Related
      ENSDARP00000100672.2, ENSDART00000114909.4
      Conserved Domains (1) summary
      cd14366
      Location:36 → 77
      CUE_CUED1; CUE domain found in CUE domain-containing protein 1 (CUED1) and similar proteins

    2. XM_005169169.4 → XP_005169226.1  CUE domain containing 1a isoform X1

      See identical proteins and their annotated locations for XP_005169226.1

      UniProtKB/TrEMBL
      A0A8M2BGJ9
      Conserved Domains (1) summary
      cd14366
      Location:36 → 77
      CUE_CUED1; CUE domain found in CUE domain-containing protein 1 (CUED1) and similar proteins

    3. XM_009305565.3 → XP_009303840.1  CUE domain containing 1a isoform X2

      UniProtKB/TrEMBL
      A0A8M3AX44
      Conserved Domains (1) summary
      cd14366
      Location:36 → 77
      CUE_CUED1; CUE domain found in CUE domain-containing protein 1 (CUED1) and similar proteins

    4. XM_009305563.3 → XP_009303838.1  CUE domain containing 1a isoform X1

      See identical proteins and their annotated locations for XP_009303838.1

      UniProtKB/TrEMBL
      A0A8M2BGJ9
      Conserved Domains (1) summary
      cd14366
      Location:36 → 77
      CUE_CUED1; CUE domain found in CUE domain-containing protein 1 (CUED1) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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