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    dhrs13a.2 dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2 [ Danio rerio (zebrafish) ]

    Gene ID: 447903, updated on 25-Apr-2024

    Summary

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    Official Symbol
    dhrs13a.2provided by ZNC
    Official Full Name
    dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040912-69
    See related
    Ensembl:ENSDARG00000111240 AllianceGenome:ZFIN:ZDB-GENE-040912-69
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fa18b09; wu:fk89f01; zgc:101565
    Summary
    Predicted to enable NADP-retinol dehydrogenase activity. Predicted to be involved in retinal metabolic process. Predicted to be active in mitochondrial inner membrane. Is expressed in EVL; periderm; and pharynx. Orthologous to human DHRS13 (dehydrogenase/reductase 13). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See dhrs13a.2 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (36784741..36793412, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (36840983..36849654, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene si:ch211-176g13.8 Neighboring gene pleckstrin homology domain containing B1 Neighboring gene dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 1 Neighboring gene PHD finger protein 12a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Attributing effects of aqueous C60 nano-aggregates to tetrahydrofuran decomposition products in larval zebrafish by assessment of gene expression. Henry TB, et al. Environ Health Perspect, 2007 Jul. PMID 17637923, Free PMC Article
    2. Insight into molecular pathways of retinal metabolism, associated with vitellogenesis in zebrafish. Levi L, et al. Am J Physiol Endocrinol Metab, 2012 Mar 15. PMID 22205629
    3. Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine. Webb KJ, et al. Genome Biol, 2009. PMID 19646228, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    dehydrogenase/reductase SDR family member 13a.2
    Names
    dehydrogenase/reductase (SDR family) member 13a.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004641.1 → NP_001004641.1  dehydrogenase/reductase SDR family member 13a.2

      See identical proteins and their annotated locations for NP_001004641.1

      Status: PROVISIONAL

      Source sequence(s)
      BC081378
      UniProtKB/TrEMBL
      B2GNW0, Q66IF0
      Related
      ENSDARP00000151382.1, ENSDART00000185966.1
      Conserved Domains (2) summary
      PRK06197
      Location:33 → 318
      PRK06197; short chain dehydrogenase; Provisional
      cl21454
      Location:36 → 311
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      36784741..36793412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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