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    TRAF3IP1 ubiquitin specific peptidase 40 [ Gallus gallus (chicken) ]

    Gene ID: 424029, updated on 6-Jun-2024

    Summary

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    Official Symbol
    TRAF3IP1provided by CGNC
    Official Full Name
    ubiquitin specific peptidase 40provided by CGNC
    Primary source
    CGNC:3107
    See related
    Ensembl:ENSGALG00010015025
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TRAF3IP1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (5976172..6012900)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (5917475..5954299)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene UDP glucuronosyltransferase family 1 member A1 Neighboring gene UDP-glucuronosyltransferase 1-9-like Neighboring gene UDP-glucuronosyltransferase 1A9-like Neighboring gene ubiquitin specific peptidase 40 Neighboring gene uncharacterized LOC121111297 Neighboring gene ankyrin repeat and SOCS box containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intraciliary transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intraciliary transport particle B IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TRAF3-interacting protein 1
    Names
    NF receptor-associated factor 3 interacting protein 1
    TNF receptor-associated factor 3 interacting protein 1
    TRAF3 interacting protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      5976172..6012900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004942511.4 → XP_004942568.3  TRAF3-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YQR1
      Related
      ENSGALP00010020985.1, ENSGALT00010036126.1

    2. XM_003641562.5 → XP_003641610.4  TRAF3-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YSD5
      Related
      ENSGALP00010020989.1, ENSGALT00010036130.1

    3. XM_046944025.1 → XP_046799981.1  TRAF3-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YQM4

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5917475..5954299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040676368.2 → XP_040532302.1  TRAF3-interacting protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0YQR1
      Conserved Domains (2) summary
      PRK12678
      Location:148 → 327
      PRK12678; transcription termination factor Rho; Provisional
      TIGR01622
      Location:239 → 450
      SF-CC1; splicing factor, CC1-like family

    2. XM_040676369.2 → XP_040532303.1  TRAF3-interacting protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0YSD5
      Conserved Domains (2) summary
      PTZ00121
      Location:136 → 655
      PTZ00121; MAEBL; Provisional
      PRK12678
      Location:148 → 327
      PRK12678; transcription termination factor Rho; Provisional

    3. XM_046921856.1 → XP_046777812.1  TRAF3-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YQM4
    Nucleotide Protein Strain
    Heading Accession and Version

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