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    fam83hb family with sequence similarity 83 member Hb [ Danio rerio (zebrafish) ]

    Gene ID: 565918, updated on 11-Apr-2024

    Summary

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    Official Symbol
    fam83hbprovided by ZNC
    Official Full Name
    family with sequence similarity 83 member Hbprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6729
    See related
    Ensembl:ENSDARG00000060830 AllianceGenome:ZFIN:ZDB-GENE-030131-6729
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fam83h; fa03f11; wu:fa03f11; si:ch211-199g17.1
    Summary
    Predicted to be involved in intermediate filament cytoskeleton organization. Predicted to colocalize with keratin filament. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 3A. Orthologous to human FAM83H (family with sequence similarity 83 member H). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See fam83hb in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (43611284..43639615, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (44015789..44044013, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene si:ch211-199g17.2 Neighboring gene CD164 sialomucin-like 2 Neighboring gene si:ch211-199g17.9 Neighboring gene si:ch211-193k19.2 Neighboring gene KIAA0319-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in intermediate filament cytoskeleton organization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    colocalizes_with keratin filament ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM83H

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001365994.1 → NP_001352923.1  protein FAM83H

      Status: VALIDATED

      Source sequence(s)
      BX649384, CR356238
      UniProtKB/Swiss-Prot
      Q1LVV0
      UniProtKB/TrEMBL
      A0A8M2B6N0, G1K2R9
      Conserved Domains (2) summary
      cd09188
      Location:17 → 282
      PLDc_FAM83H_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83H
      cl25526
      Location:836 → 934
      TonB_N; TonB N-terminal region

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      43611284..43639615 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159768.3 → XP_005159825.1  protein FAM83H isoform X1

      UniProtKB/TrEMBL
      G1K2R9
      Related
      ENSDARP00000123459.2, ENSDART00000138009.4
      Conserved Domains (2) summary
      cd09188
      Location:17 → 282
      PLDc_FAM83H_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83H
      cl25526
      Location:836 → 934
      TonB_N; TonB N-terminal region
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1LVV0.1 GenPept UniProtKB/Swiss-Prot:Q1LVV0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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