U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01994 long intergenic non-protein coding RNA 1994 [ Homo sapiens (human) ]

    Gene ID: 401103, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC01994provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1994provided by HGNC
    Primary source
    HGNC:HGNC:52827
    See related
    Ensembl:ENSG00000241098 AllianceGenome:HGNC:52827
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC01994 in Genome Data Viewer
    Location:
    3q26.33
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (182446970..182486362, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (185251686..185291076, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (182164758..182204150, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374242 Neighboring gene NANOG hESC enhancer GRCh37_chr3:181839149-181839650 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:181857572-181858371 Neighboring gene uncharacterized LOC105374243 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:181930066-181931265 Neighboring gene VISTA enhancer hs1332 Neighboring gene Sharpr-MPRA regulatory region 2239 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:182033397-182033897 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:182044533-182045074 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:182045075-182045615 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:182144163-182144749 Neighboring gene MPRA-validated peak4954 silencer Neighboring gene Sharpr-MPRA regulatory region 13029 Neighboring gene eukaryotic translation initiation factor 4E pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:182217852-182218669 Neighboring gene long intergenic non-protein coding RNA 1995 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:182240944-182242143 Neighboring gene RPL7L1 pseudogene 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040105.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC084211, AK127955
      Related
      ENST00000496220.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      182446970..182486362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      185251686..185291076 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)