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    LINC01720 long intergenic non-protein coding RNA 1720 [ Homo sapiens (human) ]

    Gene ID: 440704, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC01720provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1720provided by HGNC
    Primary source
    HGNC:HGNC:52507
    See related
    Ensembl:ENSG00000231175 AllianceGenome:HGNC:52507
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LINC01720 in Genome Data Viewer
    Location:
    1q31.1-q31.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (190624890..190801658)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (189971170..190147872)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (190594020..190770788)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene BMP/retinoic acid inducible neural specific 3 Neighboring gene uncharacterized LOC105371658 Neighboring gene MPRA-validated peak568 silencer Neighboring gene MPRA-validated peak569 silencer Neighboring gene MPRA-validated peak571 silencer Neighboring gene BRINP3 divergent transcript Neighboring gene MPRA-validated peak575 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:190647894-190649093 Neighboring gene MPRA-validated peak580 silencer Neighboring gene MPRA-validated peak582 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr1:190827140-190827685 Neighboring gene MPRA-validated peak586 silencer Neighboring gene MPRA-validated peak587 silencer Neighboring gene MPRA-validated peak588 silencer Neighboring gene MPRA-validated peak594 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2255 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2256 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 46 Neighboring gene MPRA-validated peak595 silencer Neighboring gene MPRA-validated peak596 silencer Neighboring gene long intergenic non-protein coding RNA 1680

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033922.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139135, AL158838
      Related
      ENST00000413356.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      190624890..190801658
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      189971170..190147872
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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