rbm4.1 RNA binding motif protein 4.1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rbm4.1provided by ZNC
Official Full Name: RNA binding motif protein 4.1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-3902
See related: Ensembl:ENSDARG00000036386 AllianceGenome:ZFIN:ZDB-GENE-030131-3902
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: rbm4; rna-bp4; zgc:56302; wu:fc31f07; wu:fc57h11
Summary: Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Orthologous to human RBM4 (RNA binding motif protein 4) and RBM4B (RNA binding motif protein 4B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (22801390..22806803)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (22530174..22535646)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb92f01.x1 (e-PCR)
- UniSTS:191760

fc31f07.x1 (e-PCR)
- UniSTS:187968

fi57b08.x1 (e-PCR)
- UniSTS:197724

fc57h11.x1 (e-PCR)
- UniSTS:203935

fc25a01.x1 (e-PCR)
- UniSTS:187848

fc25a01.x1 (e-PCR)
- UniSTS:193227

AI721904 (e-PCR)
- UniSTS:206035

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in mRNA splicing, via spliceosome	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nuclear speck	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: RNA-binding protein 4.1

Names: RNA binding motif protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199705.1 → NP_955999.1 RNA-binding protein 4.1

See identical proteins and their annotated locations for NP_955999.1

Status: PROVISIONAL

Source sequence(s)

BC046057

UniProtKB/Swiss-Prot

Q6IQ97

Related

ENSDARP00000052861.6, ENSDART00000052862.7

Conserved Domains (3) summary

smart00343
Location:161 → 176

ZnF_C2HC; zinc finger

cd12606
Location:2 → 68

RRM1_RBM4; RNA recognition motif 1 in vertebrate RNA-binding protein 4 (RBM4)

cd12607
Location:78 → 144

RRM2_RBM4; RNA recognition motif 2 in vertebrate RNA-binding protein 4 (RBM4)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007118.7 Reference GRCz11 Primary Assembly

Range

22801390..22806803

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021477592.1 → XP_021333267.1 RNA-binding protein 4.1 isoform X1

UniProtKB/Swiss-Prot

Q6IQ97, Q7ZV02

UniProtKB/TrEMBL

A9JT29

Conserved Domains (4) summary

smart00343
Location:161 → 176

ZnF_C2HC; zinc finger

cd12606
Location:2 → 68

RRM1_RBM4; RNA recognition motif 1 in vertebrate RNA-binding protein 4 (RBM4)

cd12607
Location:78 → 144

RRM2_RBM4; RNA recognition motif 2 in vertebrate RNA-binding protein 4 (RBM4)

cl26705
Location:148 → 182

AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
XM_009303078.3 → XP_009301353.1 RNA-binding protein 4.1 isoform X2

UniProtKB/TrEMBL

A0A1D5NSQ1, A0A8M3B123

Related

ENSDARP00000142868.1, ENSDART00000173633.2

Conserved Domains (2) summary

cd12606
Location:2 → 68

RRM1_RBM4; RNA recognition motif 1 in vertebrate RNA-binding protein 4 (RBM4)

cl17169
Location:78 → 138

RRM_SF; RNA recognition motif (RRM) superfamily