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    CELF2-AS1 CELF2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 414196, updated on 10-Oct-2023

    Summary

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    Official Symbol
    CELF2-AS1provided by HGNC
    Official Full Name
    CELF2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:23515
    See related
    AllianceGenome:HGNC:23515
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C10orf31
    Summary
    Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in bone marrow (RPKM 6.2), testis (RPKM 1.7) and 6 other tissues See more
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    Genomic context

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    See CELF2-AS1 in Genome Data Viewer
    Location:
    10p14
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (11316833..11344674, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (11328922..11356759, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (11358796..11386673, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene CUGBP Elav-like family member 2 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:11113336-11114535 Neighboring gene CELF2 antisense RNA 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2125 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2126 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2993 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2994 Neighboring gene Sharpr-MPRA regulatory region 4729 Neighboring gene Sharpr-MPRA regulatory region 12202 Neighboring gene NANOG hESC enhancer GRCh37_chr10:11224724-11225225 Neighboring gene uncharacterized LOC124902375 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2995 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2996 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2999 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2998 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2997 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3000 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3001 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3002 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3003 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3004 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3005 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3006 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3007 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3008 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:11334439-11334940 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:11334941-11335440 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3009 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:11357313-11357819 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:11357820-11358325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3010 Neighboring gene uncharacterized LOC105376409 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2127 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3011 Neighboring gene NANOG hESC enhancer GRCh37_chr10:11482790-11483302 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:11485575-11486237 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:11486238-11486901 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3013 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:11493719-11494219 Neighboring gene uncharacterized LOC105376411 Neighboring gene USP6 N-terminal like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • CELF2 antisense RNA 1 (non-protein coding)

    Clone Names

    • FLJ40494

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126062.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC026887

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      11316833..11344674 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      11328922..11356759 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001012713.1: Suppressed sequence

      Description
      NM_001012713.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8N7Q2.2 GenPept UniProtKB/Swiss-Prot:Q8N7Q2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Miscellaneous